Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OS091_RS08480 Genome accession   NZ_CP113037
Coordinates   1635870..1636313 (+) Length   147 a.a.
NCBI ID   WP_001099007.1    Uniprot ID   A0AB73JFI4
Organism   Staphylococcus aureus strain Zilean     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1630870..1641313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS091_RS08410 - 1630989..1631198 (-) 210 WP_000772137.1 hypothetical protein -
  OS091_RS08415 - 1631255..1631446 (+) 192 WP_000502678.1 hypothetical protein -
  OS091_RS08420 - 1631448..1631675 (-) 228 WP_000801108.1 hypothetical protein -
  OS091_RS08425 - 1631736..1632488 (+) 753 WP_001148617.1 phage antirepressor KilAC domain-containing protein -
  OS091_RS08430 - 1632501..1632761 (+) 261 WP_000435343.1 hypothetical protein -
  OS091_RS08435 - 1632785..1632940 (-) 156 Protein_1553 hypothetical protein -
  OS091_RS08440 - 1632995..1633321 (+) 327 WP_001025595.1 hypothetical protein -
  OS091_RS08445 - 1633318..1633417 (+) 100 Protein_1555 hypothetical protein -
  OS091_RS08450 - 1633566..1633829 (+) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  OS091_RS08455 - 1633841..1634002 (+) 162 WP_001285954.1 DUF1270 domain-containing protein -
  OS091_RS08460 - 1634091..1634408 (+) 318 WP_000829610.1 hypothetical protein -
  OS091_RS08465 - 1634413..1634673 (+) 261 WP_001556704.1 DUF1108 family protein -
  OS091_RS08470 - 1634686..1635222 (+) 537 WP_001004336.1 host-nuclease inhibitor Gam family protein -
  OS091_RS08475 - 1635223..1635873 (+) 651 WP_000840496.1 ERF family protein -
  OS091_RS08480 ssbA 1635870..1636313 (+) 444 WP_001099007.1 single-stranded DNA-binding protein Machinery gene
  OS091_RS08485 - 1636325..1636999 (+) 675 WP_000057262.1 putative HNHc nuclease -
  OS091_RS08490 - 1636996..1637145 (+) 150 WP_001081076.1 hypothetical protein -
  OS091_RS08495 - 1637138..1637419 (-) 282 WP_000414755.1 hypothetical protein -
  OS091_RS08500 - 1637485..1638255 (+) 771 WP_000190254.1 conserved phage C-terminal domain-containing protein -
  OS091_RS08505 - 1638265..1639044 (+) 780 WP_000803062.1 ATP-binding protein -
  OS091_RS08510 - 1639038..1639196 (+) 159 WP_000256594.1 hypothetical protein -
  OS091_RS08515 - 1639209..1639430 (+) 222 WP_001123669.1 DUF3269 family protein -
  OS091_RS08520 - 1639440..1639844 (+) 405 WP_000049798.1 DUF1064 domain-containing protein -
  OS091_RS08525 - 1639849..1640034 (+) 186 WP_001187236.1 DUF3113 family protein -
  OS091_RS08530 - 1640035..1640391 (+) 357 WP_000029366.1 SA1788 family PVL leukocidin-associated protein -
  OS091_RS08535 - 1640395..1640637 (+) 243 WP_000131388.1 phi PVL orf 51-like protein -
  OS091_RS08540 - 1640652..1640903 (+) 252 WP_001065099.1 DUF1024 family protein -
  OS091_RS08545 - 1640893..1641066 (+) 174 WP_000028424.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16293.83 Da        Isoelectric Point: 5.8347

>NTDB_id=759335 OS091_RS08480 WP_001099007.1 1635870..1636313(+) (ssbA) [Staphylococcus aureus strain Zilean]
MNTVNLIGNLVADPELKGQNNNVVNFAIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=759335 OS091_RS08480 WP_001099007.1 1635870..1636313(+) (ssbA) [Staphylococcus aureus strain Zilean]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAATTAAAAGGTCAAAACAACAACGTAGTTAACTTTGC
AATTGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.279

100

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

38.235

100

0.442