Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS080_RS11845 Genome accession   NZ_CP113032
Coordinates   2268282..2268677 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Akali     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2263282..2273677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS080_RS11820 thiE 2263882..2264523 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  OS080_RS11825 thiM 2264525..2265316 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  OS080_RS11830 thiD 2265300..2266130 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS080_RS11835 tenA 2266123..2266812 (-) 690 WP_000396077.1 thiaminase II -
  OS080_RS11840 sceD 2267198..2267893 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS080_RS11845 ssb 2268282..2268677 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS080_RS11850 - 2268871..2269311 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS080_RS11855 fabZ 2269370..2269810 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS080_RS11860 murA 2269844..2271109 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS080_RS11865 - 2271220..2271453 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS080_RS11870 - 2271585..2271677 (-) 93 WP_001790611.1 hypothetical protein -
  OS080_RS11875 - 2272015..2272419 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759302 OS080_RS11845 WP_000932694.1 2268282..2268677(-) (ssb) [Staphylococcus aureus strain Akali]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759302 OS080_RS11845 WP_000932694.1 2268282..2268677(-) (ssb) [Staphylococcus aureus strain Akali]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992