Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS080_RS02925 Genome accession   NZ_CP113032
Coordinates   561550..562119 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Akali     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556550..567119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS080_RS02900 cysE 557763..558410 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  OS080_RS02905 cysS 558394..559794 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  OS080_RS02910 - 559787..560191 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS080_RS02915 rlmB 560199..560945 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS080_RS02920 - 560945..561469 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS080_RS02925 sigH 561550..562119 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS080_RS02930 rpmG 562234..562377 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS080_RS02935 secE 562433..562615 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS080_RS02940 nusG 562628..563176 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS080_RS02945 rplK 563357..563779 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS080_RS02950 rplA 563987..564679 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS080_RS02955 rplJ 564951..565451 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS080_RS02960 rplL 565494..565862 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS080_RS02965 - 566037..566645 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759271 OS080_RS02925 WP_000872873.1 561550..562119(+) (sigH) [Staphylococcus aureus strain Akali]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759271 OS080_RS02925 WP_000872873.1 561550..562119(+) (sigH) [Staphylococcus aureus strain Akali]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984