Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS075_RS14515 Genome accession   NZ_CP113029
Coordinates   2839094..2839663 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Zoe     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834094..2844663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS075_RS14475 - 2834568..2835176 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  OS075_RS14480 rplL 2835351..2835719 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS075_RS14485 rplJ 2835762..2836262 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS075_RS14490 rplA 2836534..2837226 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS075_RS14495 rplK 2837434..2837856 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS075_RS14500 nusG 2838037..2838585 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS075_RS14505 secE 2838598..2838780 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS075_RS14510 rpmG 2838836..2838979 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS075_RS14515 sigH 2839094..2839663 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS075_RS14520 - 2839744..2840268 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OS075_RS14525 rlmB 2840268..2841014 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS075_RS14530 - 2841022..2841426 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS075_RS14535 cysS 2841419..2842819 (-) 1401 WP_089519189.1 cysteine--tRNA ligase -
  OS075_RS14540 cysE 2842803..2843450 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759262 OS075_RS14515 WP_000872873.1 2839094..2839663(-) (sigH) [Staphylococcus aureus strain Zoe]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759262 OS075_RS14515 WP_000872873.1 2839094..2839663(-) (sigH) [Staphylococcus aureus strain Zoe]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984