Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS083_RS14960 Genome accession   NZ_CP113027
Coordinates   2901992..2902561 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain Syndra     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896992..2907561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS14920 - 2897466..2898074 (-) 609 WP_000020296.1 class I SAM-dependent methyltransferase -
  OS083_RS14925 rplL 2898249..2898617 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS083_RS14930 rplJ 2898660..2899160 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS083_RS14935 rplA 2899432..2900124 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS083_RS14940 rplK 2900332..2900754 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS083_RS14945 nusG 2900935..2901483 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS083_RS14950 secE 2901496..2901678 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OS083_RS14955 rpmG 2901734..2901877 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS083_RS14960 sigH 2901992..2902561 (-) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS083_RS14965 - 2902642..2903166 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OS083_RS14970 rlmB 2903166..2903912 (-) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS083_RS14975 - 2903920..2904324 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  OS083_RS14980 cysS 2904317..2905717 (-) 1401 WP_267814133.1 cysteine--tRNA ligase -
  OS083_RS14985 cysE 2905701..2906348 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=759219 OS083_RS14960 WP_000872872.1 2901992..2902561(-) (sigH) [Staphylococcus aureus strain Syndra]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759219 OS083_RS14960 WP_000872872.1 2901992..2902561(-) (sigH) [Staphylococcus aureus strain Syndra]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979