Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OS083_RS12565 Genome accession   NZ_CP113027
Coordinates   2444664..2445650 (-) Length   328 a.a.
NCBI ID   WP_267814053.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Syndra     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2439664..2450650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS12540 - 2439924..2440271 (-) 348 WP_001242107.1 hypothetical protein -
  OS083_RS12545 - 2440457..2441050 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  OS083_RS12550 - 2441154..2441519 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  OS083_RS12555 yjbH 2441542..2442348 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  OS083_RS12560 pepF 2442808..2444616 (-) 1809 WP_021758235.1 oligoendopeptidase F -
  OS083_RS12565 coiA 2444664..2445650 (-) 987 WP_267814053.1 competence protein CoiA Machinery gene
  OS083_RS12570 mecA 2445771..2446490 (-) 720 WP_001217728.1 adaptor protein MecA -
  OS083_RS12575 spxA 2446861..2447256 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  OS083_RS12580 trpS 2447551..2448540 (+) 990 WP_267814054.1 tryptophan--tRNA ligase -
  OS083_RS12585 - 2448566..2450212 (-) 1647 WP_000277724.1 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38775.30 Da        Isoelectric Point: 9.6529

>NTDB_id=759214 OS083_RS12565 WP_267814053.1 2444664..2445650(-) (coiA) [Staphylococcus aureus strain Syndra]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTTIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=759214 OS083_RS12565 WP_267814053.1 2444664..2445650(-) (coiA) [Staphylococcus aureus strain Syndra]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACTACAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963