Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   P7I84_RS29335 Genome accession   NZ_CP124638
Coordinates   6273109..6273783 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain 2021CK-01158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6268109..6278783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I84_RS29310 (P7I84_29320) - 6268619..6269943 (+) 1325 Protein_5787 aspartate aminotransferase family protein -
  P7I84_RS29315 (P7I84_29325) - 6270009..6270371 (+) 363 WP_003096551.1 cupin domain-containing protein -
  P7I84_RS29320 (P7I84_29330) rpmG 6270508..6270663 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  P7I84_RS29325 (P7I84_29335) rpmB 6270675..6270911 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  P7I84_RS29330 (P7I84_29340) - 6271267..6272847 (+) 1581 WP_003096557.1 ABC transporter substrate-binding protein -
  P7I84_RS29335 (P7I84_29345) radC 6273109..6273783 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  P7I84_RS29340 (P7I84_29350) coaBC 6273923..6275131 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  P7I84_RS29345 (P7I84_29355) dut 6275139..6275594 (+) 456 WP_003096567.1 dUTP diphosphatase -
  P7I84_RS29350 (P7I84_29360) - 6275631..6278237 (+) 2607 WP_282399423.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=759213 P7I84_RS29335 WP_003096559.1 6273109..6273783(-) (radC) [Pseudomonas aeruginosa strain 2021CK-01158]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=759213 P7I84_RS29335 WP_003096559.1 6273109..6273783(-) (radC) [Pseudomonas aeruginosa strain 2021CK-01158]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGTTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397