Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OS083_RS09770 Genome accession   NZ_CP113027
Coordinates   1842585..1843031 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Syndra     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1837585..1848031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS09735 - 1838079..1838282 (+) 204 WP_000087561.1 YqgQ family protein -
  OS083_RS09740 - 1838279..1839265 (+) 987 WP_000161315.1 ROK family glucokinase -
  OS083_RS09745 - 1839265..1839594 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS083_RS09750 - 1839591..1840214 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS083_RS09755 comGA 1840266..1841240 (+) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  OS083_RS09760 comGB 1841212..1842282 (+) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS083_RS09765 comGC 1842296..1842607 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS083_RS09770 comGD 1842585..1843031 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS083_RS09775 comGE 1843018..1843317 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS083_RS09780 comGF 1843235..1843732 (+) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS083_RS09785 - 1843829..1843975 (+) 147 WP_001789879.1 hypothetical protein -
  OS083_RS09790 - 1843965..1844489 (+) 525 WP_001015116.1 shikimate kinase -
  OS083_RS09795 gcvT 1844648..1845739 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OS083_RS09800 gcvPA 1845759..1847105 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=759205 OS083_RS09770 WP_001796473.1 1842585..1843031(+) (comGD) [Staphylococcus aureus strain Syndra]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=759205 OS083_RS09770 WP_001796473.1 1842585..1843031(+) (comGD) [Staphylococcus aureus strain Syndra]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993