Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OS083_RS09520 Genome accession   NZ_CP113027
Coordinates   1793535..1794221 (+) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Syndra     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788535..1799221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS09485 yqeH 1789062..1790162 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  OS083_RS09490 aroE 1790176..1790982 (+) 807 WP_000666767.1 shikimate dehydrogenase -
  OS083_RS09495 yhbY 1790986..1791276 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OS083_RS09500 nadD 1791279..1791848 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OS083_RS09505 yqeK 1791838..1792422 (+) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OS083_RS09510 rsfS 1792423..1792776 (+) 354 WP_001088020.1 ribosome silencing factor -
  OS083_RS09515 - 1792779..1793495 (+) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  OS083_RS09520 comEA 1793535..1794221 (+) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  OS083_RS09525 - 1794313..1794774 (+) 462 WP_000439693.1 ComE operon protein 2 -
  OS083_RS09530 - 1794779..1796455 (+) 1677 Protein_1758 ComEC/Rec2 family competence protein -
  OS083_RS09535 - 1796475..1798122 (-) 1648 Protein_1759 IS1182-like element ISSau3 family transposase -
  OS083_RS09540 - 1798400..1798936 (+) 537 Protein_1760 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=759200 OS083_RS09520 WP_078055782.1 1793535..1794221(+) (comEA) [Staphylococcus aureus strain Syndra]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=759200 OS083_RS09520 WP_078055782.1 1793535..1794221(+) (comEA) [Staphylococcus aureus strain Syndra]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982