Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P7I84_RS19595 Genome accession   NZ_CP124638
Coordinates   4250319..4250648 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01158     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4245319..4255648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I84_RS19580 (P7I84_19585) uvrB 4246706..4248718 (-) 2013 WP_282393592.1 excinuclease ABC subunit UvrB Machinery gene
  P7I84_RS19585 (P7I84_19590) - 4248906..4250102 (+) 1197 WP_003110849.1 amino acid aminotransferase -
  P7I84_RS19595 (P7I84_19600) comEA/comE1 4250319..4250648 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  P7I84_RS19600 (P7I84_19605) - 4250839..4252836 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P7I84_RS19605 (P7I84_19610) - 4252849..4253874 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  P7I84_RS19610 (P7I84_19615) - 4253975..4254916 (-) 942 WP_099319968.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=759174 P7I84_RS19595 WP_003091430.1 4250319..4250648(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2021CK-01158]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=759174 P7I84_RS19595 WP_003091430.1 4250319..4250648(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2021CK-01158]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385