Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS090_RS14330 Genome accession   NZ_CP113018
Coordinates   2780052..2780621 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Taliyah     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2775052..2785621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS14290 - 2775526..2776134 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  OS090_RS14295 rplL 2776309..2776677 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS090_RS14300 rplJ 2776720..2777220 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS090_RS14305 rplA 2777492..2778184 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS090_RS14310 rplK 2778392..2778814 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS090_RS14315 nusG 2778995..2779543 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS090_RS14320 secE 2779556..2779738 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS090_RS14325 rpmG 2779794..2779937 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS090_RS14330 sigH 2780052..2780621 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS090_RS14335 - 2780702..2781226 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OS090_RS14340 rlmB 2781226..2781972 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS090_RS14345 - 2781980..2782384 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS090_RS14350 cysS 2782377..2783777 (-) 1401 WP_000631964.1 cysteine--tRNA ligase -
  OS090_RS14355 cysE 2783761..2784408 (-) 648 WP_001838365.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759174 OS090_RS14330 WP_000872873.1 2780052..2780621(-) (sigH) [Staphylococcus aureus strain Taliyah]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759174 OS090_RS14330 WP_000872873.1 2780052..2780621(-) (sigH) [Staphylococcus aureus strain Taliyah]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984