Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS090_RS05415 Genome accession   NZ_CP113018
Coordinates   1073332..1073727 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Taliyah     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1068332..1078727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS05385 - 1069590..1069994 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  OS090_RS05390 - 1070332..1070424 (+) 93 WP_001790611.1 hypothetical protein -
  OS090_RS05395 - 1070556..1070789 (+) 234 WP_000384523.1 DUF1146 family protein -
  OS090_RS05400 murA 1070900..1072165 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS090_RS05405 fabZ 1072199..1072639 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS090_RS05410 - 1072698..1073138 (-) 441 WP_000846746.1 YwpF-like family protein -
  OS090_RS05415 ssb 1073332..1073727 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS090_RS05420 sceD 1074116..1074811 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS090_RS05425 tenA 1075197..1075886 (+) 690 WP_000396077.1 thiaminase II -
  OS090_RS05430 thiD 1075879..1076709 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS090_RS05435 thiM 1076693..1077484 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  OS090_RS05440 thiE 1077486..1078127 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759143 OS090_RS05415 WP_000932694.1 1073332..1073727(+) (ssb) [Staphylococcus aureus strain Taliyah]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759143 OS090_RS05415 WP_000932694.1 1073332..1073727(+) (ssb) [Staphylococcus aureus strain Taliyah]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992