Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OS077_RS12920 Genome accession   NZ_CP113016
Coordinates   2577923..2578609 (-) Length   228 a.a.
NCBI ID   WP_072361794.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Azir     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572923..2583609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS12900 rpsT 2573837..2574088 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OS077_RS12905 holA 2574133..2575107 (-) 975 WP_031587652.1 DNA polymerase III subunit delta -
  OS077_RS12910 comEC 2575164..2577365 (-) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OS077_RS12915 - 2577370..2577831 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OS077_RS12920 comEA 2577923..2578609 (-) 687 WP_072361794.1 ComEA family DNA-binding protein Machinery gene
  OS077_RS12925 - 2578649..2579365 (-) 717 WP_000084822.1 class I SAM-dependent DNA methyltransferase -
  OS077_RS12930 rsfS 2579368..2579721 (-) 354 WP_001088020.1 ribosome silencing factor -
  OS077_RS12935 yqeK 2579722..2580306 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OS077_RS12940 nadD 2580296..2580865 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OS077_RS12945 yhbY 2580868..2581158 (-) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  OS077_RS12950 aroE 2581162..2581968 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  OS077_RS12955 - 2581982..2582215 (-) 234 Protein_2543 ribosome biogenesis GTPase YqeH -
  OS077_RS12960 yqeH 2582245..2583345 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=759124 OS077_RS12920 WP_072361794.1 2577923..2578609(-) (comEA) [Staphylococcus aureus strain Azir]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=759124 OS077_RS12920 WP_072361794.1 2577923..2578609(-) (comEA) [Staphylococcus aureus strain Azir]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACGGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

97.797

99.561

0.974