Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OS077_RS09390 Genome accession   NZ_CP113016
Coordinates   1870639..1871625 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Azir     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865639..1876625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS09365 opp4B 1865852..1866814 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  OS077_RS09370 opp4C 1866826..1867707 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  OS077_RS09375 trpS 1867749..1868738 (-) 990 WP_031589556.1 tryptophan--tRNA ligase -
  OS077_RS09380 spxA 1869033..1869428 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OS077_RS09385 mecA 1869799..1870518 (+) 720 WP_001217723.1 adaptor protein MecA -
  OS077_RS09390 coiA 1870639..1871625 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  OS077_RS09395 pepF 1871673..1873481 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  OS077_RS09400 yjbH 1873941..1874747 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OS077_RS09405 - 1874770..1875135 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OS077_RS09410 - 1875239..1875832 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  OS077_RS09415 - 1876018..1876365 (+) 348 WP_031589545.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=759108 OS077_RS09390 WP_000959292.1 1870639..1871625(+) (coiA) [Staphylococcus aureus strain Azir]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=759108 OS077_RS09390 WP_000959292.1 1870639..1871625(+) (coiA) [Staphylococcus aureus strain Azir]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976