Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS077_RS07100 Genome accession   NZ_CP113016
Coordinates   1432900..1433469 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Azir     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427900..1438469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS07075 cysE 1429113..1429760 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OS077_RS07080 cysS 1429744..1431144 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  OS077_RS07085 - 1431137..1431541 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS077_RS07090 rlmB 1431549..1432295 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS077_RS07095 - 1432295..1432819 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS077_RS07100 sigH 1432900..1433469 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS077_RS07105 rpmG 1433584..1433727 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS077_RS07110 secE 1433783..1433965 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OS077_RS07115 nusG 1433978..1434526 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS077_RS07120 rplK 1434707..1435129 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS077_RS07125 rplA 1435337..1436029 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS077_RS07130 rplJ 1436301..1436801 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  OS077_RS07135 rplL 1436844..1437212 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS077_RS07140 - 1437387..1437995 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=759102 OS077_RS07100 WP_000872876.1 1432900..1433469(+) (sigH) [Staphylococcus aureus strain Azir]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759102 OS077_RS07100 WP_000872876.1 1432900..1433469(+) (sigH) [Staphylococcus aureus strain Azir]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984