Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS077_RS00940 Genome accession   NZ_CP113016
Coordinates   184891..185286 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Azir     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 179891..190286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS00915 thiE 180354..180995 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OS077_RS00920 thiM 180988..181788 (-) 801 WP_031590212.1 hydroxyethylthiazole kinase -
  OS077_RS00925 thiD 181772..182602 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS077_RS00930 tenA 182595..183284 (-) 690 WP_000396077.1 thiaminase II -
  OS077_RS00935 sceD 183808..184503 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS077_RS00940 ssb 184891..185286 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS077_RS00945 - 185480..185920 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS077_RS00950 fabZ 185979..186419 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS077_RS00955 murA 186453..187718 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS077_RS00960 - 187829..188062 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS077_RS00965 - 188194..188286 (-) 93 WP_001790611.1 hypothetical protein -
  OS077_RS00970 - 188624..189028 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759092 OS077_RS00940 WP_000932694.1 184891..185286(-) (ssb) [Staphylococcus aureus strain Azir]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759092 OS077_RS00940 WP_000932694.1 184891..185286(-) (ssb) [Staphylococcus aureus strain Azir]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992