Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS078_RS15380 Genome accession   NZ_CP113015
Coordinates   2973452..2973847 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Zed     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2968452..2978847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS078_RS15355 thiE 2969052..2969693 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  OS078_RS15360 thiM 2969695..2970486 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  OS078_RS15365 thiD 2970470..2971300 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS078_RS15370 tenA 2971293..2971982 (-) 690 WP_000396077.1 thiaminase II -
  OS078_RS15375 sceD 2972368..2973063 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS078_RS15380 ssb 2973452..2973847 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS078_RS15385 - 2974041..2974481 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS078_RS15390 fabZ 2974540..2974980 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS078_RS15395 murA 2975014..2976279 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS078_RS15400 - 2976390..2976623 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS078_RS15405 - 2976755..2976847 (-) 93 WP_001790611.1 hypothetical protein -
  OS078_RS15410 - 2977185..2977589 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759086 OS078_RS15380 WP_000932694.1 2973452..2973847(-) (ssb) [Staphylococcus aureus strain Zed]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759086 OS078_RS15380 WP_000932694.1 2973452..2973847(-) (ssb) [Staphylococcus aureus strain Zed]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992