Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS078_RS06480 Genome accession   NZ_CP113015
Coordinates   1269191..1269760 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Zed     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264191..1274760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS078_RS06455 cysE 1265404..1266051 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  OS078_RS06460 cysS 1266035..1267435 (+) 1401 WP_267836481.1 cysteine--tRNA ligase -
  OS078_RS06465 - 1267428..1267832 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS078_RS06470 rlmB 1267840..1268586 (+) 747 WP_267836482.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS078_RS06475 - 1268586..1269110 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS078_RS06480 sigH 1269191..1269760 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS078_RS06485 rpmG 1269875..1270018 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS078_RS06490 secE 1270074..1270256 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS078_RS06495 nusG 1270269..1270817 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS078_RS06500 rplK 1270998..1271420 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS078_RS06505 rplA 1271628..1272320 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS078_RS06510 rplJ 1272592..1273092 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS078_RS06515 rplL 1273135..1273503 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS078_RS06520 - 1273678..1274286 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759055 OS078_RS06480 WP_000872873.1 1269191..1269760(+) (sigH) [Staphylococcus aureus strain Zed]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759055 OS078_RS06480 WP_000872873.1 1269191..1269760(+) (sigH) [Staphylococcus aureus strain Zed]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984