Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS092_RS10045 Genome accession   NZ_CP113009
Coordinates   1931242..1931637 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Orianna     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1926242..1936637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS092_RS10020 thiE 1926842..1927483 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  OS092_RS10025 thiM 1927485..1928276 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  OS092_RS10030 thiD 1928260..1929090 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS092_RS10035 tenA 1929083..1929772 (-) 690 WP_000396077.1 thiaminase II -
  OS092_RS10040 sceD 1930158..1930853 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS092_RS10045 ssb 1931242..1931637 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS092_RS10050 - 1931831..1932271 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS092_RS10055 fabZ 1932330..1932770 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS092_RS10060 murA 1932804..1934069 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS092_RS10065 - 1934180..1934413 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS092_RS10070 - 1934545..1934637 (-) 93 WP_001790611.1 hypothetical protein -
  OS092_RS10075 - 1934975..1935379 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759034 OS092_RS10045 WP_000932694.1 1931242..1931637(-) (ssb) [Staphylococcus aureus strain Orianna]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759034 OS092_RS10045 WP_000932694.1 1931242..1931637(-) (ssb) [Staphylococcus aureus strain Orianna]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992