Detailed information NTG0759022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I86_RS31680
• Genome accession: NZ_CP124626
• Coordinates: 6641251..6642255 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01161
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6636251..6647255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I86_RS31665 (P7I86_31665)	-	6636735..6637742 (+)	1008	WP_003092265.1	TolB family protein	-
P7I86_RS31670 (P7I86_31670)	mutS	6637868..6640435 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I86_RS31675 (P7I86_31675)	fdxA	6640502..6640825 (+)	324	WP_003092272.1	ferredoxin FdxA	-
P7I86_RS31680 (P7I86_31680)	rpoS	6641251..6642255 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I86_RS31685 (P7I86_31685)	-	6642360..6643253 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I86_RS31690 (P7I86_31690)	-	6643299..6643934 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I86_RS31695 (P7I86_31695)	surE	6643967..6644716 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I86_RS31700 (P7I86_31700)	truD	6644704..6645771 (-)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
P7I86_RS31705 (P7I86_31705)	ispF	6645768..6646241 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I86_RS31710 (P7I86_31710)	fghA	6646312..6647163 (-)	852	WP_003117489.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759022 P7I86_RS31680 WP_003113871.1 6641251..6642255(-) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01161]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759022 P7I86_RS31680 WP_003113871.1 6641251..6642255(-) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01161]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653