Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS092_RS01480 Genome accession   NZ_CP113009
Coordinates   269436..270005 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Orianna     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 264436..275005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS092_RS01455 cysE 265649..266296 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  OS092_RS01460 cysS 266280..267680 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  OS092_RS01465 - 267673..268077 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS092_RS01470 rlmB 268085..268831 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS092_RS01475 - 268831..269355 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS092_RS01480 sigH 269436..270005 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS092_RS01485 rpmG 270120..270263 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS092_RS01490 secE 270319..270501 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS092_RS01495 nusG 270514..271062 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS092_RS01500 rplK 271243..271665 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS092_RS01505 rplA 271873..272565 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS092_RS01510 rplJ 272837..273337 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS092_RS01515 rplL 273380..273748 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS092_RS01520 - 273923..274531 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759003 OS092_RS01480 WP_000872873.1 269436..270005(+) (sigH) [Staphylococcus aureus strain Orianna]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759003 OS092_RS01480 WP_000872873.1 269436..270005(+) (sigH) [Staphylococcus aureus strain Orianna]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984