Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS082_RS14015 Genome accession   NZ_CP113007
Coordinates   2756474..2757043 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Ryze     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2751474..2762043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS13975 - 2751948..2752556 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  OS082_RS13980 rplL 2752731..2753099 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS082_RS13985 rplJ 2753142..2753642 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS082_RS13990 rplA 2753914..2754606 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS082_RS13995 rplK 2754814..2755236 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS082_RS14000 nusG 2755417..2755965 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS082_RS14005 secE 2755978..2756160 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS082_RS14010 rpmG 2756216..2756359 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS082_RS14015 sigH 2756474..2757043 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS082_RS14020 - 2757124..2757648 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OS082_RS14025 rlmB 2757648..2758394 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS082_RS14030 - 2758402..2758806 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS082_RS14035 cysS 2758799..2760199 (-) 1401 WP_000631964.1 cysteine--tRNA ligase -
  OS082_RS14040 cysE 2760183..2760830 (-) 648 WP_001838365.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=758995 OS082_RS14015 WP_000872873.1 2756474..2757043(-) (sigH) [Staphylococcus aureus strain Ryze]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=758995 OS082_RS14015 WP_000872873.1 2756474..2757043(-) (sigH) [Staphylococcus aureus strain Ryze]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984