Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OS082_RS08740 Genome accession   NZ_CP113007
Coordinates   1692608..1693054 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Ryze     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687608..1698054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS08705 - 1688102..1688305 (+) 204 WP_000087561.1 YqgQ family protein -
  OS082_RS08710 - 1688302..1689288 (+) 987 WP_000161314.1 ROK family glucokinase -
  OS082_RS08715 - 1689288..1689617 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS082_RS08720 - 1689614..1690237 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS082_RS08725 comGA 1690289..1691263 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  OS082_RS08730 comGB 1691235..1692305 (+) 1071 WP_000775706.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS082_RS08735 comGC 1692319..1692630 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS082_RS08740 comGD 1692608..1693054 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS082_RS08745 comGE 1693041..1693340 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS082_RS08750 comGF 1693258..1693755 (+) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS082_RS08755 - 1693852..1693998 (+) 147 WP_001789879.1 hypothetical protein -
  OS082_RS08760 - 1693988..1694512 (+) 525 WP_001015117.1 shikimate kinase -
  OS082_RS08765 gcvT 1694671..1695762 (+) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  OS082_RS08770 gcvPA 1695782..1697128 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=758982 OS082_RS08740 WP_001790850.1 1692608..1693054(+) (comGD) [Staphylococcus aureus strain Ryze]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=758982 OS082_RS08740 WP_001790850.1 1692608..1693054(+) (comGD) [Staphylococcus aureus strain Ryze]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993