Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OS082_RS08500 Genome accession   NZ_CP113007
Coordinates   1645701..1646387 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain Ryze     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640701..1651387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS08465 yqeH 1641228..1642328 (+) 1101 WP_001280148.1 ribosome biogenesis GTPase YqeH -
  OS082_RS08470 aroE 1642342..1643148 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  OS082_RS08475 yhbY 1643152..1643442 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  OS082_RS08480 nadD 1643445..1644014 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OS082_RS08485 yqeK 1644004..1644588 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OS082_RS08490 rsfS 1644589..1644942 (+) 354 WP_001088022.1 ribosome silencing factor -
  OS082_RS08495 - 1644945..1645661 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  OS082_RS08500 comEA 1645701..1646387 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  OS082_RS08505 - 1646479..1646940 (+) 462 WP_000439693.1 ComE operon protein 2 -
  OS082_RS08510 comEC 1646945..1649146 (+) 2202 WP_001807336.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OS082_RS08515 holA 1649203..1650177 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  OS082_RS08520 rpsT 1650222..1650473 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=758976 OS082_RS08500 WP_001792568.1 1645701..1646387(+) (comEA) [Staphylococcus aureus strain Ryze]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=758976 OS082_RS08500 WP_001792568.1 1645701..1646387(+) (comEA) [Staphylococcus aureus strain Ryze]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969