Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS082_RS05120 Genome accession   NZ_CP113007
Coordinates   1052298..1052693 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Ryze     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1047298..1057693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS05090 - 1048556..1048960 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  OS082_RS05095 - 1049298..1049390 (+) 93 WP_001790611.1 hypothetical protein -
  OS082_RS05100 - 1049522..1049755 (+) 234 WP_000384523.1 DUF1146 family protein -
  OS082_RS05105 murA 1049866..1051131 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS082_RS05110 fabZ 1051165..1051605 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS082_RS05115 - 1051664..1052104 (-) 441 WP_000846746.1 YwpF-like family protein -
  OS082_RS05120 ssb 1052298..1052693 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS082_RS05125 sceD 1053082..1053777 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS082_RS05130 tenA 1054163..1054852 (+) 690 WP_000396077.1 thiaminase II -
  OS082_RS05135 thiD 1054845..1055675 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS082_RS05140 thiM 1055659..1056450 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  OS082_RS05145 thiE 1056452..1057093 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=758964 OS082_RS05120 WP_000932694.1 1052298..1052693(+) (ssb) [Staphylococcus aureus strain Ryze]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=758964 OS082_RS05120 WP_000932694.1 1052298..1052693(+) (ssb) [Staphylococcus aureus strain Ryze]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992