Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS073_RS09380 Genome accession   NZ_CP113005
Coordinates   1759899..1760294 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Galio     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1754899..1765294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS073_RS09355 thiE 1755499..1756140 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  OS073_RS09360 thiM 1756142..1756933 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  OS073_RS09365 thiD 1756917..1757747 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS073_RS09370 tenA 1757740..1758429 (-) 690 WP_000396077.1 thiaminase II -
  OS073_RS09375 sceD 1758815..1759510 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OS073_RS09380 ssb 1759899..1760294 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS073_RS09385 - 1760488..1760928 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS073_RS09390 fabZ 1760987..1761427 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS073_RS09395 murA 1761461..1762726 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS073_RS09400 - 1762837..1763070 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS073_RS09405 - 1763202..1763294 (-) 93 WP_001790611.1 hypothetical protein -
  OS073_RS09410 - 1763632..1764036 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=758944 OS073_RS09380 WP_000932694.1 1759899..1760294(-) (ssb) [Staphylococcus aureus strain Galio]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=758944 OS073_RS09380 WP_000932694.1 1759899..1760294(-) (ssb) [Staphylococcus aureus strain Galio]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992