Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS073_RS00595 Genome accession   NZ_CP113005
Coordinates   68116..68685 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Galio     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 63116..73685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS073_RS00570 cysE 64329..64976 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  OS073_RS00575 cysS 64960..66360 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  OS073_RS00580 - 66353..66757 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS073_RS00585 rlmB 66765..67511 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS073_RS00590 - 67511..68035 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS073_RS00595 sigH 68116..68685 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS073_RS00600 rpmG 68800..68943 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS073_RS00605 secE 68999..69181 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS073_RS00610 nusG 69194..69742 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS073_RS00615 rplK 69923..70345 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS073_RS00620 rplA 70553..71245 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS073_RS00625 rplJ 71517..72017 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS073_RS00630 rplL 72060..72428 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS073_RS00635 - 72603..73211 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=758913 OS073_RS00595 WP_000872873.1 68116..68685(+) (sigH) [Staphylococcus aureus strain Galio]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=758913 OS073_RS00595 WP_000872873.1 68116..68685(+) (sigH) [Staphylococcus aureus strain Galio]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984