Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDO09_RS08450 Genome accession   NZ_AP024926
Coordinates   1580225..1580692 (-) Length   155 a.a.
NCBI ID   WP_143586369.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA1-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575225..1585692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS08425 (TthAA11_16650) - 1575432..1575845 (+) 414 WP_143586361.1 PaaI family thioesterase -
  LDO09_RS08430 (TthAA11_16660) - 1575819..1576781 (-) 963 WP_143586363.1 membrane dipeptidase -
  LDO09_RS08435 (TthAA11_16670) uvrC 1576796..1578577 (+) 1782 WP_223968662.1 excinuclease ABC subunit UvrC Machinery gene
  LDO09_RS08440 (TthAA11_16680) - 1578628..1579551 (-) 924 WP_223968665.1 ribose-phosphate pyrophosphokinase -
  LDO09_RS08445 (TthAA11_16690) mtnN 1579566..1580228 (-) 663 WP_143586367.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  LDO09_RS08450 (TthAA11_16700) luxS 1580225..1580692 (-) 468 WP_143586369.1 S-ribosylhomocysteine lyase Regulator
  LDO09_RS08455 (TthAA11_16710) - 1580731..1581558 (+) 828 WP_143586371.1 KaiC domain-containing protein -
  LDO09_RS08460 (TthAA11_16720) - 1581603..1582214 (+) 612 WP_014510710.1 circadian clock protein KaiC -
  LDO09_RS08465 (TthAA11_16730) guaA 1582227..1583738 (+) 1512 WP_143586373.1 glutamine-hydrolyzing GMP synthase -
  LDO09_RS08470 (TthAA11_16740) - 1583738..1584301 (+) 564 WP_172619201.1 Uma2 family endonuclease -
  LDO09_RS08475 (TthAA11_16750) - 1584326..1584613 (+) 288 WP_143586377.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  LDO09_RS08480 (TthAA11_16760) - 1584613..1584999 (+) 387 WP_223968667.1 VOC family protein -
  LDO09_RS08485 (TthAA11_16770) rnhA 1584996..1585496 (+) 501 WP_223968669.1 ribonuclease HI -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16809.31 Da        Isoelectric Point: 6.4901

>NTDB_id=75869 LDO09_RS08450 WP_143586369.1 1580225..1580692(-) (luxS) [Thermus thermophilus strain AA1-1]
MAEVESFSLDHTRVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGEVPGASFKECGNYRDHDLPGAKAWAEKVLQAGLKVQATIPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=75869 LDO09_RS08450 WP_143586369.1 1580225..1580692(-) (luxS) [Thermus thermophilus strain AA1-1]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAGGGTCAAGGCCCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTTGCCCAGCCCAACCGGGAGGCCCTGCCCACGGGGGCCTTGCACA
CCCTGGAGCACCTCCTCGCAGGGTATTTGCGGGACCACCTCCCAGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAGGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTCAAGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTGCAGGCGGGGCTTAAGGTCCAGGCCACCATTCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.208

99.355

0.419

Multiple sequence alignment