Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   OSC48_RS25025 Genome accession   NZ_CP112867
Coordinates   5425532..5425939 (-) Length   135 a.a.
NCBI ID   WP_181076543.1    Uniprot ID   -
Organism   Pseudomonas quebecensis isolate S1Bt7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5420532..5430939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC48_RS25010 (OSC48_25010) - 5422536..5424587 (-) 2052 WP_181076548.1 methyl-accepting chemotaxis protein -
  OSC48_RS25015 (OSC48_25015) - 5424584..5425108 (-) 525 WP_181076547.1 chemotaxis protein CheW -
  OSC48_RS25020 (OSC48_25020) pilH 5425121..5425486 (-) 366 WP_181076545.1 twitching motility response regulator PilH -
  OSC48_RS25025 (OSC48_25025) pilG 5425532..5425939 (-) 408 WP_181076543.1 twitching motility response regulator PilG Regulator
  OSC48_RS25030 (OSC48_25030) gshB 5426178..5427155 (+) 978 WP_253509703.1 glutathione synthase -
  OSC48_RS25035 (OSC48_25035) - 5427252..5428157 (+) 906 WP_181076540.1 energy transducer TonB -
  OSC48_RS25040 (OSC48_25040) - 5428212..5428781 (+) 570 WP_181076539.1 YqgE/AlgH family protein -
  OSC48_RS25045 (OSC48_25045) ruvX 5428781..5429218 (+) 438 WP_003176676.1 Holliday junction resolvase RuvX -
  OSC48_RS25050 (OSC48_25050) pyrR 5429301..5429807 (+) 507 WP_266247258.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  OSC48_RS25055 (OSC48_25055) - 5429832..5430836 (+) 1005 WP_181076535.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14862.35 Da        Isoelectric Point: 7.3842

>NTDB_id=758488 OSC48_RS25025 WP_181076543.1 5425532..5425939(-) (pilG) [Pseudomonas quebecensis isolate S1Bt7]
MEQHSNALRVMVIDDSKTIRRTAETLLKNAGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
AIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=758488 OSC48_RS25025 WP_181076543.1 5425532..5425939(-) (pilG) [Pseudomonas quebecensis isolate S1Bt7]
ATGGAACAGCATTCCAACGCCTTGAGGGTGATGGTGATCGACGATTCGAAGACGATCCGCCGTACCGCCGAGACGCTGTT
GAAAAACGCGGGGTGCGACGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCGCGGATTGTGGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
GCGATCCCGGTGATCATGCTGTCATCCAAGGACGGCCTGTTCGATAAAGCCAAGGGGCGCATCGTGGGGGTCGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTACGTGCCGGGGTTCGCCGCAGTGGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363