Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OH540_RS17340 Genome accession   NZ_CP124542
Coordinates   3876170..3876769 (-) Length   199 a.a.
NCBI ID   WP_064729020.1    Uniprot ID   A0A191V162
Organism   Streptomyces sp. BPPL-273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3871170..3881769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH540_RS17315 (OH540_17315) - 3871858..3872925 (-) 1068 WP_283014451.1 aspartate-semialdehyde dehydrogenase -
  OH540_RS17320 (OH540_17320) - 3872925..3874202 (-) 1278 WP_064729024.1 aspartate kinase -
  OH540_RS17325 (OH540_17325) - 3874445..3874630 (-) 186 WP_064729023.1 DUF397 domain-containing protein -
  OH540_RS17330 (OH540_17330) - 3874623..3875438 (-) 816 WP_283014452.1 DUF5753 domain-containing protein -
  OH540_RS17335 (OH540_17335) - 3875518..3876177 (-) 660 WP_064729021.1 DUF5063 domain-containing protein -
  OH540_RS17340 (OH540_17340) recR 3876170..3876769 (-) 600 WP_064729020.1 recombination mediator RecR Machinery gene
  OH540_RS17345 (OH540_17345) - 3876843..3877187 (-) 345 WP_079163602.1 YbaB/EbfC family nucleoid-associated protein -
  OH540_RS17350 (OH540_17350) - 3877424..3878188 (+) 765 WP_161345116.1 SLATT domain-containing protein -
  OH540_RS17355 (OH540_17355) - 3878482..3880227 (-) 1746 WP_226484251.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21777.10 Da        Isoelectric Point: 4.9848

>NTDB_id=758481 OH540_RS17340 WP_064729020.1 3876170..3876769(-) (recR) [Streptomyces sp. BPPL-273]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEEQCNICRDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=758481 OH540_RS17340 WP_064729020.1 3876170..3876769(-) (recR) [Streptomyces sp. BPPL-273]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTCCAGGCGGAACCGACCGACGTACGACGGCTCGCCCAGGCCCTCATGGAAGTGAAGGCCAAGGTCC
GCTTCTGCGCGACCTGCGGGAACGTCGCGCAGGAGGAGCAGTGCAACATCTGCCGCGACCCCCGGCGCGACCCCGCCGTC
ATCTGCGTGGTGGAGGAGCCCAAGGACGTCGTCGCCATCGAGCGCACCCGTGAGTTCCGCGGGCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGACGGGGTCGGCCCCGACGATCTCCGCATCCGTGAGCTGCTGGCCCGCCTGGCCGACGGCA
CGGTGACGGAGCTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191V162

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457