Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OH540_RS16525 Genome accession   NZ_CP124542
Coordinates   3703023..3704432 (+) Length   469 a.a.
NCBI ID   WP_064729140.1    Uniprot ID   -
Organism   Streptomyces sp. BPPL-273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3698023..3709432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH540_RS16510 (OH540_16510) - 3698910..3699842 (-) 933 WP_064729143.1 Ppx/GppA phosphatase family protein -
  OH540_RS16515 (OH540_16515) - 3699914..3700726 (+) 813 WP_161341941.1 hypothetical protein -
  OH540_RS16520 (OH540_16520) - 3700773..3702536 (-) 1764 WP_283014400.1 hypothetical protein -
  OH540_RS16525 (OH540_16525) radA 3703023..3704432 (+) 1410 WP_064729140.1 DNA repair protein RadA Machinery gene
  OH540_RS16530 (OH540_16530) disA 3704514..3705638 (+) 1125 WP_064729139.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OH540_RS16535 (OH540_16535) - 3705663..3706514 (-) 852 WP_283014401.1 hypothetical protein -
  OH540_RS16540 (OH540_16540) - 3706689..3707333 (+) 645 WP_226487422.1 phosphatase PAP2 family protein -
  OH540_RS16545 (OH540_16545) - 3707338..3708003 (-) 666 WP_226487421.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49726.74 Da        Isoelectric Point: 7.4629

>NTDB_id=758475 OH540_RS16525 WP_064729140.1 3703023..3704432(+) (radA) [Streptomyces sp. BPPL-273]
MAARAKSTKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGRVPDGMKVLEVADIGDALRVLPRSRRRDAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=758475 OH540_RS16525 WP_064729140.1 3703023..3704432(+) (radA) [Streptomyces sp. BPPL-273]
ATGGCTGCTCGTGCGAAGTCCACCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGTCGGTGTCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACGGCGCCGGGGC
GGGTGACCACGTCGGCCGTGCCGATCGGGCAGGTCGACGGGCGGCAGGCGACCGCGCGGTCGACCGGTGTGCCCGAGCTG
GACCGGGTGCTCGGCGGGGGTCTTGTGCCGGGGGCCGTGGTGCTGGTCGCGGGCGAGCCGGGGGTCGGGAAGTCCACGCT
GCTGCTGGACGTCGCCGCGAAGTCCGCGAGCGACGAGCACCGGACGCTGTACGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGGATCGGGGCGATCGACGATCACCTCTATCTCGCCGCCGAGACCGATCTCGCGGCGGTGCTC
GGGCACCTGGACGCGGTCAAGCCGTCGCTGCTCATCATGGACTCCGTGCAGACCGTGGCCTCGCCCGAGATCGACGGCGC
TCCCGGCGGCATGGCACAGGTGCGGGAGGTGGCGGGCGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGTCCACCCTGC
TGGTCGGTCACGTCACGAAGGACGGGGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGGCTGCGGCTGGTGCGGGGCGTCAAGAACCGGTACGGGACGACCGATGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTGGCCGACCCCAGCGGGCTGTTCCTCACCCGGCGCGCCGAGCCGGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAGGGGCGCCGTCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTGGATTCCCAGATT
CCGTCGCCCCGGCGCACGACCTCGGGGCTCGAGACGTCCCGGGTGTCCATGATGCTGGCGGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTGGGGAAGCGGGACATCTACAGCGCGACCGTGGGCGGGGTGAAACTGTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGTGAGGTCGGCCTC
GCCGGGGAGGTGAGACGGGTCACGGGCGTGCAGCGCCGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
ACCGAGCGACCCCGGCAGGGTTCCCGACGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGACGCCCCACGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

43.363

96.375

0.418
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus pneumoniae R6

43.43

95.736

0.416
  radA Streptococcus pneumoniae Rx1

43.43

95.736

0.416
  radA Streptococcus pneumoniae TIGR4

43.43

95.736

0.416
  radA Streptococcus pneumoniae D39

43.43

95.736

0.416
  radA Streptococcus mitis SK321

44.706

90.618

0.405