Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QJB09_RS09530 Genome accession   NZ_CP124517
Coordinates   1906164..1906901 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AVS0343     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901164..1911901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJB09_RS09515 (QJB09_09515) clpC 1901618..1904191 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QJB09_RS09520 (QJB09_09520) yfiH 1904321..1905052 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  QJB09_RS09525 (QJB09_09525) rluD 1905049..1906029 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QJB09_RS09530 (QJB09_09530) comL 1906164..1906901 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QJB09_RS09535 (QJB09_09535) raiA 1907171..1907512 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QJB09_RS09540 (QJB09_09540) pheL 1907616..1907663 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QJB09_RS09545 (QJB09_09545) pheA 1907762..1908922 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  QJB09_RS09550 (QJB09_09550) tyrA 1908965..1910086 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QJB09_RS09555 (QJB09_09555) aroF 1910097..1911167 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QJB09_RS09560 (QJB09_09560) yfiL 1911377..1911742 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=758378 QJB09_RS09530 WP_000197686.1 1906164..1906901(+) (comL) [Escherichia coli strain AVS0343]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=758378 QJB09_RS09530 WP_000197686.1 1906164..1906901(+) (comL) [Escherichia coli strain AVS0343]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376