Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QJP70_RS06200 Genome accession   NZ_CP124515
Coordinates   1279651..1280388 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AVS0282     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1274651..1285388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP70_RS06170 (QJP70_06170) yfiL 1274810..1275175 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  QJP70_RS06175 (QJP70_06175) aroF 1275385..1276455 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QJP70_RS06180 (QJP70_06180) tyrA 1276466..1277587 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QJP70_RS06185 (QJP70_06185) pheA 1277630..1278790 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  QJP70_RS06190 (QJP70_06190) pheL 1278889..1278936 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QJP70_RS06195 (QJP70_06195) raiA 1279040..1279381 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QJP70_RS06200 (QJP70_06200) comL 1279651..1280388 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QJP70_RS06205 (QJP70_06205) rluD 1280523..1281503 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QJP70_RS06210 (QJP70_06210) yfiH 1281500..1282231 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  QJP70_RS06215 (QJP70_06215) clpC 1282361..1284934 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=758296 QJP70_RS06200 WP_000197686.1 1279651..1280388(-) (comL) [Escherichia coli strain AVS0282]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=758296 QJP70_RS06200 WP_000197686.1 1279651..1280388(-) (comL) [Escherichia coli strain AVS0282]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376