Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QJP59_RS00405 Genome accession   NZ_CP124511
Coordinates   71192..71848 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain AVS0501     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 66192..76848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP59_RS00375 (QJP59_00375) dcyD 67071..68057 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QJP59_RS00380 (QJP59_00380) tcyL 68072..68740 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QJP59_RS00385 (QJP59_00385) tcyN 68737..69489 (+) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QJP59_RS00390 (QJP59_00390) sdiA 69719..70441 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  QJP59_RS00395 (QJP59_00395) yecF 70509..70733 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QJP59_RS00400 (QJP59_00400) yecU 70720..70896 (-) 177 WP_001307856.1 protein YecU -
  QJP59_RS00405 (QJP59_00405) letA 71192..71848 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QJP59_RS00410 (QJP59_00410) uvrC 71845..73677 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QJP59_RS00415 (QJP59_00415) pgsA 73734..74282 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJP59_RS00435 (QJP59_00435) yecA 74931..75596 (+) 666 WP_000847877.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=758096 QJP59_RS00405 WP_000611328.1 71192..71848(+) (letA) [Escherichia coli strain AVS0501]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=758096 QJP59_RS00405 WP_000611328.1 71192..71848(+) (letA) [Escherichia coli strain AVS0501]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482