Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OPS05_RS23975 Genome accession   NZ_CP111114
Coordinates   5310239..5311828 (+) Length   529 a.a.
NCBI ID   WP_134787622.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain FP1691     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5305239..5316828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPS05_RS23955 (OPS05_23955) pgeF 5307034..5307756 (-) 723 WP_134787357.1 peptidoglycan editing factor PgeF -
  OPS05_RS23960 (OPS05_23960) rluD 5307753..5308715 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OPS05_RS23965 (OPS05_23965) - 5308866..5309888 (+) 1023 WP_027612809.1 outer membrane protein assembly factor BamD -
  OPS05_RS23970 (OPS05_23970) - 5310016..5310249 (+) 234 WP_027612810.1 PP0621 family protein -
  OPS05_RS23975 (OPS05_23975) pilS 5310239..5311828 (+) 1590 WP_134787622.1 sensor histidine kinase Regulator
  OPS05_RS23980 (OPS05_23980) pilR 5311825..5313171 (+) 1347 WP_134787358.1 sigma-54-dependent transcriptional regulator Regulator
  OPS05_RS23985 (OPS05_23985) thiO 5313303..5314403 (-) 1101 WP_134787359.1 glycine oxidase ThiO -
  OPS05_RS23990 (OPS05_23990) - 5314461..5314862 (-) 402 WP_097089243.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58593.33 Da        Isoelectric Point: 7.0069

>NTDB_id=757956 OPS05_RS23975 WP_134787622.1 5310239..5311828(+) (pilS) [Pseudomonas koreensis strain FP1691]
MIAEVANADRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAIANTLLRRRIGLLIAAIGALGIVGSSFLLGFSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAEQRASEVTSLEALNALILQRMRTGILVLDEQRRVQLANHSAKNLLAQSHLEGHLIS
DYSPALVERLQLWLSNPTLRPQSLKIPGNGLELQPSFIALDQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSRRMNRVIENVLQLSRRQQSAPQRLDLKPWLEHFVAESREQASER
QSIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSVLLHQQAEVWLALFVDPDSQLAVLEVQDNGPGVPSDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=757956 OPS05_RS23975 WP_134787622.1 5310239..5311828(+) (pilS) [Pseudomonas koreensis strain FP1691]
GTGATCGCTGAGGTCGCCAACGCCGACCGTAAACAGGCGCAGCGCCTGCTGCGCCTGTATCATCTCTACCGTTTGAGCGT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCAGCCGACGACGATCTGCTGCGCA
GCGGCAGTTGGTTGTATCTGGTGCTGAACATTCTGCTGGTGGTGTTCCTGGAGAACACCCGCCGCCCGGCGCAGTTGTTC
ACCCTGGCCTTGGTCGATGTGCTGTTGCTGTGCGGCCTGTTCTACGCGGCGGGCGGCGTGGCCAGCGCCATCGGCAACCT
GCTGATTGTCTCGGTGGCGATCGCCAACACCCTGCTGCGCCGGCGCATCGGCCTGCTGATTGCCGCCATCGGCGCACTCG
GCATAGTCGGCTCCAGCTTTCTGCTGGGCTTCAGTCACCCCCTGAGCGCCAATGACTATCTGCAAGCCGGGACCCTCGGC
GCTTTGTGTTTTGCCGCATCGTTGCTGGTCCAGGGCCTGATCCGGCGTCTGGAAGTCAGCGAAAATCTCGCCGAACAGCG
TGCCAGCGAAGTCACCAGTCTTGAAGCCCTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTACTCGACG
AACAGCGCCGGGTACAGCTGGCCAATCACAGCGCGAAAAATCTGTTGGCCCAGTCGCATCTTGAAGGGCATTTGATCAGC
GACTACTCGCCGGCATTAGTCGAGCGTCTGCAGCTGTGGCTGAGCAACCCGACCCTGCGCCCGCAGAGTCTGAAGATCCC
CGGCAACGGCCTGGAACTGCAACCCAGCTTCATCGCCCTCGACCAGAGTCCCAACCAGCAAACCCTGGTGTTCCTCGAAG
ATCTGGCGCAAATCGCTCAGCAAGCCCAGCAGCTCAAACTCGCCGCACTGGGGCGTCTGACTGCCGGCATCTCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGTCATGCCGCGCAGCTATTGGCGGAGTCCGAGGAACTCGATAGCGCCGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCGCCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCGCGCCGCCAGC
AAAGCGCTCCGCAACGGCTGGATCTCAAACCGTGGCTGGAACACTTTGTTGCCGAGAGCCGCGAGCAGGCGAGCGAGCGC
CAGTCGATTCATTTGCGGATCAATTCCGGGGACTTCATCACGTTGATGGATCCCGACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGGCACAGCGTTCTGCTGCACCAGCAGGCCGAAGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGCTGGCGGTGCTCGAAGTACAGGACAACGGCCCCGGTGTGCCGTCCGATCAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597