Detailed information NTG0757957

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: OPS05_RS23980
• Genome accession: NZ_CP111114
• Coordinates: 5311825..5313171 (+)
• Length: 448 a.a.
• NCBI ID: WP_134787358.1
• Uniprot ID: -
• Organism: Pseudomonas koreensis strain FP1691
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5306825..5318171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPS05_RS23955 (OPS05_23955)	pgeF	5307034..5307756 (-)	723	WP_134787357.1	peptidoglycan editing factor PgeF	-
OPS05_RS23960 (OPS05_23960)	rluD	5307753..5308715 (-)	963	WP_007963852.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OPS05_RS23965 (OPS05_23965)	-	5308866..5309888 (+)	1023	WP_027612809.1	outer membrane protein assembly factor BamD	-
OPS05_RS23970 (OPS05_23970)	-	5310016..5310249 (+)	234	WP_027612810.1	PP0621 family protein	-
OPS05_RS23975 (OPS05_23975)	pilS	5310239..5311828 (+)	1590	WP_134787622.1	sensor histidine kinase	Regulator
OPS05_RS23980 (OPS05_23980)	pilR	5311825..5313171 (+)	1347	WP_134787358.1	sigma-54-dependent transcriptional regulator	Regulator
OPS05_RS23985 (OPS05_23985)	thiO	5313303..5314403 (-)	1101	WP_134787359.1	glycine oxidase ThiO	-
OPS05_RS23990 (OPS05_23990)	-	5314461..5314862 (-)	402	WP_097089243.1	type IV pilin protein	-
OPS05_RS23995 (OPS05_23995)	-	5314878..5317961 (-)	3084	WP_134787360.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49994.23 Da
• Isoelectric Point: 6.4266

>NTDB_id=757957 OPS05_RS23980 WP_134787358.1 5311825..5313171(+) (pilR) [Pseudomonas koreensis strain FP1691]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGTGLDLVQHIQQRHPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGGVASSIDRRLLGDSQPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAQQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
THMLQRLASNSGQPAAQLHPQALEALKRYRFPGNVRELENVLERAHTLCENQVIEAADLRLSEGNCAVEDGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=757957 OPS05_RS23980 WP_134787358.1 5311825..5313171(+) (pilR) [Pseudomonas koreensis strain FP1691]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGTGCTCGCAACCTCGGCGAAGCCCAGGCACTGTTGCAGCGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGGCTGGACCTGGTGCAGCACATCCAGCAACGTCATCCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCGATCAATGCGCTGAAGGCCGGCGCCTTCGACTTCCTCACCAA
GCCGGTTGATCTCACGCGCCTGCGCGAACTGGTCAGCACCGCACTGCGCATGCCAGCGGCGGGGGGCGTCGCATCGTCGA
TAGATCGGCGCCTGCTCGGCGACTCGCAGCCCATGCGCGACCTTCGCAAACAGATCGACAAATTGGCGCGCAGTCAGGCA
CCGGTCTACATCAGCGGCGAATCGGGCAGCGGCAAAGAACTGGTCGCGCGGCTGATCCACGAACAAGGGCCGCGCGCGCA
ACAGCCGTTTGTACCGGTCAATTGCGGGGCGATCCCTTCAGAGCTGATGGAGAGCGAATTTTTTGGCCATCGCAAAGGCA
GCTTTACCGGCGCGGTGGACGACAAACCGGGGCTGTTTCAGGCCGCGCACGGCGGCACCCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGTCGATGCAAGTCAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAAGA
AACCGTGGTCGATGTGCGCATTCTGTGCGCCACACACAAAGACCTGGAAGCGGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ACCTGTATTACCGCTTGAATGTGATCGAACTGCGCGTGCCATCCCTGCGCGAACGGCGCGACGACATCGAAGTGCTGGCC
ACGCACATGCTCCAGCGTCTGGCCAGCAACAGTGGCCAGCCGGCAGCCCAATTGCACCCGCAAGCGCTTGAAGCACTGAA
GCGTTATCGTTTTCCCGGAAATGTGCGAGAACTGGAGAATGTCCTCGAACGCGCGCACACTCTGTGCGAAAACCAGGTGA
TCGAGGCTGCGGATTTGCGCTTGAGCGAAGGCAATTGCGCAGTCGAGGACGGCATTGCCGACCTGACGCAGATCGATAAC
CTTGAGGACTATCTGGAAAACGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACGCGCTGGAATCGCACGGCGGC
AGCGCAACGCTTGAGCCTGTCGTTTCGCTCGATGCGCTACAGGCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	98.884	0.781
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498