Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QJP88_RS09560 Genome accession   NZ_CP124506
Coordinates   1986478..1986954 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1981478..1991954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP88_RS25420 - 1981708..1981890 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  QJP88_RS09520 (QJP88_09520) - 1982010..1982090 (+) 81 WP_023441679.1 hypothetical protein -
  QJP88_RS09525 (QJP88_09525) istA 1982301..1983842 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  QJP88_RS09530 (QJP88_09530) istB 1983857..1984603 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  QJP88_RS09535 (QJP88_09535) - 1984966..1985046 (-) 81 Protein_1877 hypothetical protein -
  QJP88_RS09540 (QJP88_09540) yeeW 1985092..1985286 (-) 195 WP_000988601.1 DUF5983 family protein -
  QJP88_RS09545 (QJP88_09545) cbtA 1985283..1985657 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  QJP88_RS09550 (QJP88_09550) cbeA 1985746..1986114 (-) 369 WP_001546021.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  QJP88_RS09555 (QJP88_09555) - 1986194..1986415 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  QJP88_RS09560 (QJP88_09560) radC 1986478..1986954 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  QJP88_RS09565 (QJP88_09565) - 1986970..1987443 (-) 474 WP_001385393.1 antirestriction protein -
  QJP88_RS09570 (QJP88_09570) - 1987706..1988527 (-) 822 WP_001234710.1 DUF932 domain-containing protein -
  QJP88_RS09575 (QJP88_09575) - 1988748..1989158 (-) 411 WP_000846704.1 hypothetical protein -
  QJP88_RS09580 (QJP88_09580) - 1989174..1989851 (-) 678 WP_001362823.1 hypothetical protein -
  QJP88_RS09585 (QJP88_09585) - 1989987..1991057 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=757957 QJP88_RS09560 WP_001186773.1 1986478..1986954(-) (radC) [Escherichia coli strain AVS0750]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=757957 QJP88_RS09560 WP_001186773.1 1986478..1986954(-) (radC) [Escherichia coli strain AVS0750]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392