Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | OPS05_RS23880 | Genome accession | NZ_CP111114 |
| Coordinates | 5296175..5297047 (+) | Length | 290 a.a. |
| NCBI ID | WP_134787355.1 | Uniprot ID | - |
| Organism | Pseudomonas koreensis strain FP1691 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5291175..5302047
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OPS05_RS23855 (OPS05_23855) | - | 5291366..5291662 (+) | 297 | WP_134787354.1 | DUF2845 domain-containing protein | - |
| OPS05_RS23860 (OPS05_23860) | - | 5291928..5292284 (-) | 357 | WP_025108814.1 | BON domain-containing protein | - |
| OPS05_RS23865 (OPS05_23865) | - | 5292584..5293024 (-) | 441 | WP_098965660.1 | pilin | - |
| OPS05_RS23870 (OPS05_23870) | pilB | 5293253..5294953 (+) | 1701 | WP_098965662.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OPS05_RS23875 (OPS05_23875) | pilC | 5294956..5296173 (+) | 1218 | WP_098965663.1 | type II secretion system F family protein | Machinery gene |
| OPS05_RS23880 (OPS05_23880) | pilD | 5296175..5297047 (+) | 873 | WP_134787355.1 | prepilin peptidase | Machinery gene |
| OPS05_RS23885 (OPS05_23885) | coaE | 5297044..5297667 (+) | 624 | WP_134787356.1 | dephospho-CoA kinase | - |
| OPS05_RS23890 (OPS05_23890) | yacG | 5297664..5297861 (+) | 198 | WP_003228296.1 | DNA gyrase inhibitor YacG | - |
| OPS05_RS23895 (OPS05_23895) | - | 5297868..5298083 (-) | 216 | WP_003228298.1 | hypothetical protein | - |
| OPS05_RS23900 (OPS05_23900) | - | 5298149..5298838 (-) | 690 | WP_115988876.1 | energy-coupling factor ABC transporter permease | - |
| OPS05_RS23905 (OPS05_23905) | - | 5298956..5299582 (+) | 627 | WP_003228301.1 | DUF1780 domain-containing protein | - |
| OPS05_RS23910 (OPS05_23910) | - | 5299579..5300106 (+) | 528 | WP_096795222.1 | MOSC domain-containing protein | - |
| OPS05_RS23915 (OPS05_23915) | - | 5300158..5300331 (+) | 174 | WP_003228304.1 | DUF3094 family protein | - |
| OPS05_RS23920 (OPS05_23920) | - | 5300395..5301693 (+) | 1299 | WP_047600277.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32145.42 Da Isoelectric Point: 7.9859
>NTDB_id=757955 OPS05_RS23880 WP_134787355.1 5296175..5297047(+) (pilD) [Pseudomonas koreensis strain FP1691]
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPRMLERDWRQQAQDVLGLPTETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPRMLERDWRQQAQDVLGLPTETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=757955 OPS05_RS23880 WP_134787355.1 5296175..5297047(+) (pilD) [Pseudomonas koreensis strain FP1691]
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGTTGGGTCTGGTGGTCGGCAG
TTTCCTCAACGTACTGGTCTGGCGCCTGCCGAGAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTCCTCGGCC
TGCCGACCGAAACGCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACCTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTTGCCTGGCATTTGGGTTTCGGCTGGCCGGCGGGCC
TGTTGATCGTCCTTACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACAATCCTGCTGTCGTCGCTGGTGGGG
GCGATTGTCGGAGTGATTCTGCTACGTCTGCGTGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGTTGGGTCTGGTGGTCGGCAG
TTTCCTCAACGTACTGGTCTGGCGCCTGCCGAGAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTCCTCGGCC
TGCCGACCGAAACGCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACCTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTTGCCTGGCATTTGGGTTTCGGCTGGCCGGCGGGCC
TGTTGATCGTCCTTACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACAATCCTGCTGTCGTCGCTGGTGGGG
GCGATTGTCGGAGTGATTCTGCTACGTCTGCGTGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.546 |
97.241 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter nosocomialis M2 |
50.562 |
92.069 |
0.466 |
| pilD | Acinetobacter baumannii D1279779 |
49.813 |
92.069 |
0.459 |
| pilD | Neisseria gonorrhoeae MS11 |
49.259 |
93.103 |
0.459 |