Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OPS05_RS20500 Genome accession   NZ_CP111114
Coordinates   4554749..4555384 (-) Length   211 a.a.
NCBI ID   WP_003227083.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain FP1691     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4549749..4560384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPS05_RS20465 (OPS05_20465) - 4550000..4550470 (-) 471 WP_027612345.1 (2Fe-2S)-binding protein -
  OPS05_RS20470 (OPS05_20470) murB 4550866..4551885 (-) 1020 WP_134787080.1 UDP-N-acetylmuramate dehydrogenase -
  OPS05_RS20475 (OPS05_20475) - 4551882..4552346 (-) 465 WP_134787081.1 low molecular weight protein-tyrosine-phosphatase -
  OPS05_RS20480 (OPS05_20480) kdsB 4552346..4553110 (-) 765 WP_134787082.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OPS05_RS20485 (OPS05_20485) - 4553107..4553292 (-) 186 WP_003174668.1 Trm112 family protein -
  OPS05_RS20490 (OPS05_20490) lpxK 4553314..4554324 (-) 1011 WP_134787083.1 tetraacyldisaccharide 4'-kinase -
  OPS05_RS20495 (OPS05_20495) - 4554324..4554752 (-) 429 WP_097088472.1 ExbD/TolR family protein -
  OPS05_RS20500 (OPS05_20500) exbB 4554749..4555384 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OPS05_RS20505 (OPS05_20505) comA 4555496..4557709 (-) 2214 WP_134787084.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OPS05_RS20510 (OPS05_20510) - 4557846..4558364 (+) 519 WP_098965042.1 DUF2062 domain-containing protein -
  OPS05_RS20515 (OPS05_20515) - 4558506..4559285 (-) 780 WP_098965044.1 ABC transporter permease -
  OPS05_RS20520 (OPS05_20520) - 4559282..4560214 (-) 933 WP_027612335.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.00 Da        Isoelectric Point: 6.8768

>NTDB_id=757949 OPS05_RS20500 WP_003227083.1 4554749..4555384(-) (exbB) [Pseudomonas koreensis strain FP1691]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=757949 OPS05_RS20500 WP_003227083.1 4554749..4555384(-) (exbB) [Pseudomonas koreensis strain FP1691]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAGCTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGTTGCTGGGCCTGTTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTCCTGGCCGGCGGTATTTCCAAGGCACTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839