Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | ORT68_RS07885 | Genome accession | NZ_CP111111 |
| Coordinates | 1674830..1675702 (-) | Length | 290 a.a. |
| NCBI ID | WP_002484839.1 | Uniprot ID | A0A4Y7VXK4 |
| Organism | Staphylococcus epidermidis strain KCTC 13172 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1636370..1707244 | 1674830..1675702 | within | 0 |
Gene organization within MGE regions
Location: 1636370..1707244
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORT68_RS07740 (ORT68_07740) | yfmF | 1637410..1638681 (-) | 1272 | WP_002439538.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| ORT68_RS07745 (ORT68_07745) | - | 1638712..1639425 (-) | 714 | WP_002439536.1 | GntR family transcriptional regulator | - |
| ORT68_RS07750 (ORT68_07750) | - | 1639428..1641821 (-) | 2394 | WP_002439534.1 | DNA translocase FtsK | - |
| ORT68_RS07755 (ORT68_07755) | rnjB | 1642087..1643760 (-) | 1674 | WP_002457357.1 | ribonuclease J2 | - |
| ORT68_RS07760 (ORT68_07760) | pnp | 1644128..1646233 (-) | 2106 | WP_001832554.1 | polyribonucleotide nucleotidyltransferase | - |
| ORT68_RS07765 (ORT68_07765) | rpsO | 1646365..1646634 (-) | 270 | WP_002439528.1 | 30S ribosomal protein S15 | - |
| ORT68_RS07770 (ORT68_07770) | - | 1646754..1647725 (-) | 972 | WP_001832563.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ORT68_RS07775 (ORT68_07775) | truB | 1647741..1648658 (-) | 918 | WP_266196228.1 | tRNA pseudouridine(55) synthase TruB | - |
| ORT68_RS07780 (ORT68_07780) | rbfA | 1648796..1649146 (-) | 351 | WP_001829509.1 | 30S ribosome-binding factor RbfA | - |
| ORT68_RS07785 (ORT68_07785) | infB | 1649449..1651611 (-) | 2163 | WP_002468903.1 | translation initiation factor IF-2 | - |
| ORT68_RS07790 (ORT68_07790) | - | 1651616..1651933 (-) | 318 | WP_002439520.1 | YlxQ family RNA-binding protein | - |
| ORT68_RS07795 (ORT68_07795) | rnpM | 1651933..1652217 (-) | 285 | WP_001829465.1 | RNase P modulator RnpM | - |
| ORT68_RS07800 (ORT68_07800) | nusA | 1652235..1653458 (-) | 1224 | WP_259980298.1 | transcription termination factor NusA | - |
| ORT68_RS07805 (ORT68_07805) | rimP | 1653479..1653946 (-) | 468 | WP_002439519.1 | ribosome maturation factor RimP | - |
| ORT68_RS07810 (ORT68_07810) | - | 1654125..1658435 (-) | 4311 | WP_002456566.1 | PolC-type DNA polymerase III | - |
| ORT68_RS07815 (ORT68_07815) | - | 1658685..1660388 (-) | 1704 | WP_001829513.1 | proline--tRNA ligase | - |
| ORT68_RS07820 (ORT68_07820) | rseP | 1660407..1661693 (-) | 1287 | WP_001829501.1 | RIP metalloprotease RseP | - |
| ORT68_RS07825 (ORT68_07825) | - | 1661927..1662709 (-) | 783 | WP_001829499.1 | phosphatidate cytidylyltransferase | - |
| ORT68_RS07830 (ORT68_07830) | - | 1662713..1663483 (-) | 771 | WP_001832561.1 | isoprenyl transferase | - |
| ORT68_RS07835 (ORT68_07835) | frr | 1663704..1664258 (-) | 555 | WP_001829472.1 | ribosome recycling factor | - |
| ORT68_RS07840 (ORT68_07840) | pyrH | 1664275..1664997 (-) | 723 | WP_002439511.1 | UMP kinase | - |
| ORT68_RS07845 (ORT68_07845) | tsf | 1665138..1666016 (-) | 879 | WP_002439509.1 | translation elongation factor Ts | - |
| ORT68_RS07850 (ORT68_07850) | rpsB | 1666168..1666956 (-) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
| ORT68_RS07855 (ORT68_07855) | codY | 1667319..1668089 (-) | 771 | WP_002439506.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| ORT68_RS07860 (ORT68_07860) | hslU | 1668113..1669516 (-) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| ORT68_RS07865 (ORT68_07865) | hslV | 1669585..1670127 (-) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| ORT68_RS07870 (ORT68_07870) | xerC | 1670131..1670991 (-) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| ORT68_RS07875 (ORT68_07875) | trmFO | 1671246..1672553 (-) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ORT68_RS07880 (ORT68_07880) | topA | 1672578..1674647 (-) | 2070 | WP_266196229.1 | type I DNA topoisomerase | - |
| ORT68_RS07885 (ORT68_07885) | dprA | 1674830..1675702 (-) | 873 | WP_002484839.1 | DNA-processing protein DprA | Machinery gene |
| ORT68_RS07895 (ORT68_07895) | sucD | 1676507..1677415 (-) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| ORT68_RS07900 (ORT68_07900) | sucC | 1677437..1678603 (-) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ORT68_RS07905 (ORT68_07905) | - | 1678711..1679481 (-) | 771 | WP_001829514.1 | ribonuclease HII | - |
| ORT68_RS07910 (ORT68_07910) | ylqF | 1679486..1680349 (-) | 864 | WP_002468554.1 | ribosome biogenesis GTPase YlqF | - |
| ORT68_RS07915 (ORT68_07915) | - | 1680678..1683278 (+) | 2601 | WP_010959172.1 | YfhO family protein | - |
| ORT68_RS07920 (ORT68_07920) | - | 1683271..1685874 (+) | 2604 | WP_020368058.1 | YfhO family protein | - |
| ORT68_RS07925 (ORT68_07925) | rplS | 1686404..1686754 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| ORT68_RS07930 (ORT68_07930) | trmD | 1686860..1687597 (-) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ORT68_RS07935 (ORT68_07935) | rimM | 1687597..1688100 (-) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| ORT68_RS07940 (ORT68_07940) | rpsP | 1688227..1688502 (-) | 276 | WP_266196230.1 | 30S ribosomal protein S16 | - |
| ORT68_RS07945 (ORT68_07945) | ffh | 1688810..1690177 (-) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| ORT68_RS07950 (ORT68_07950) | - | 1690208..1690540 (-) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| ORT68_RS07955 (ORT68_07955) | ftsY | 1690542..1691768 (-) | 1227 | WP_001830080.1 | signal recognition particle-docking protein FtsY | - |
| ORT68_RS07960 (ORT68_07960) | smc | 1691765..1695334 (-) | 3570 | WP_002502436.1 | chromosome segregation protein SMC | - |
| ORT68_RS07965 (ORT68_07965) | rnc | 1695461..1696198 (-) | 738 | WP_002470220.1 | ribonuclease III | - |
| ORT68_RS07970 (ORT68_07970) | - | 1696313..1696546 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| ORT68_RS07975 (ORT68_07975) | fabG | 1696773..1697507 (-) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ORT68_RS07980 (ORT68_07980) | fabD | 1697500..1698426 (-) | 927 | WP_001830062.1 | ACP S-malonyltransferase | - |
| ORT68_RS07985 (ORT68_07985) | plsX | 1698428..1699405 (-) | 978 | WP_001830112.1 | phosphate acyltransferase PlsX | - |
| ORT68_RS07990 (ORT68_07990) | fapR | 1699407..1699967 (-) | 561 | WP_001830099.1 | transcription factor FapR | - |
| ORT68_RS07995 (ORT68_07995) | recG | 1700126..1702174 (-) | 2049 | WP_020368084.1 | ATP-dependent DNA helicase RecG | - |
| ORT68_RS08000 (ORT68_08000) | fakA | 1702378..1704036 (-) | 1659 | WP_002489351.1 | fatty acid kinase catalytic subunit FakA | - |
| ORT68_RS08005 (ORT68_08005) | - | 1704051..1704425 (-) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| ORT68_RS08010 (ORT68_08010) | rpmB | 1704783..1704971 (+) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| ORT68_RS08015 (ORT68_08015) | - | 1705054..1705689 (-) | 636 | WP_002489340.1 | thiamine diphosphokinase | - |
| ORT68_RS08020 (ORT68_08020) | rpe | 1705694..1706338 (-) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| ORT68_RS08025 (ORT68_08025) | rsgA | 1706339..1707214 (-) | 876 | WP_002456227.1 | ribosome small subunit-dependent GTPase A | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33717.61 Da Isoelectric Point: 9.3616
>NTDB_id=757931 ORT68_RS07885 WP_002484839.1 1674830..1675702(-) (dprA) [Staphylococcus epidermidis strain KCTC 13172]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=757931 ORT68_RS07885 WP_002484839.1 1674830..1675702(-) (dprA) [Staphylococcus epidermidis strain KCTC 13172]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |