Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OP701_RS12685 Genome accession   NZ_CP111073
Coordinates   2532438..2533508 (-) Length   356 a.a.
NCBI ID   WP_060399020.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSXE-2102     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2527438..2538508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP701_RS12640 (OP701_12640) tapA 2527916..2528680 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  OP701_RS12645 (OP701_12645) - 2528953..2529279 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  OP701_RS12650 (OP701_12650) - 2529321..2529500 (-) 180 WP_003236949.1 YqzE family protein -
  OP701_RS12655 (OP701_12655) comGG 2529571..2529945 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  OP701_RS12660 (OP701_12660) comGF 2529946..2530329 (-) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  OP701_RS12665 (OP701_12665) comGE 2530355..2530699 (-) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  OP701_RS12670 (OP701_12670) comGD 2530683..2531114 (-) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  OP701_RS12675 (OP701_12675) comGC 2531104..2531400 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  OP701_RS12680 (OP701_12680) comGB 2531414..2532451 (-) 1038 WP_060399019.1 competence type IV pilus assembly protein ComGB Machinery gene
  OP701_RS12685 (OP701_12685) comGA 2532438..2533508 (-) 1071 WP_060399020.1 competence protein ComGA Machinery gene
  OP701_RS12690 (OP701_12690) - 2533471..2533746 (-) 276 WP_060399021.1 hypothetical protein -
  OP701_RS12695 (OP701_12695) - 2533724..2534134 (-) 411 WP_060399022.1 CBS domain-containing protein -
  OP701_RS12700 (OP701_12700) corA 2534197..2535141 (-) 945 WP_003236968.1 magnesium transporter CorA -
  OP701_RS12705 (OP701_12705) - 2535285..2536613 (+) 1329 WP_060399023.1 hemolysin family protein -
  OP701_RS12710 (OP701_12710) - 2536673..2537512 (-) 840 WP_003236972.1 STAS domain-containing protein -
  OP701_RS12720 (OP701_12720) mgsR 2537737..2538114 (-) 378 WP_003236975.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40470.66 Da        Isoelectric Point: 9.1889

>NTDB_id=757670 OP701_RS12685 WP_060399020.1 2532438..2533508(-) (comGA) [Bacillus inaquosorum strain BSXE-2102]
MDSIEKISRTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEDCVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIQQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRSTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=757670 OP701_RS12685 WP_060399020.1 2532438..2533508(-) (comGA) [Bacillus inaquosorum strain BSXE-2102]
TTGGATTCAATAGAAAAGATAAGCAGAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGTGATGCCATCATTCATTTTCGGGTTGATCATGCATTGTTGAAAAAAAGGAACATGAAAAAAGAAGACTGTG
TAAGACTGATTTCACATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGACGAAAGCCGCAAAATGGTTCGCTTACG
TTAAAGCTTGAAGAGGGACATGTTCATTTAAGAATGTCAACGCTCCCTACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATATAATATCCCTTCGATTGATAAACTGTCATTATTTCCGAAGACAGGAGCCACCTTGCTCTCATTTTTAA
AACATTCCCACGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACCACTACACTATACTCTCTTGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAAACAAGGGACGAGGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCGGGTGTGACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCCAAAATTGCGGTGCGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAC
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCCAACAGACCGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCGGTGTATTGCCGCCAGTCAC
GAAGCACCAGGAGAGCAAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAGTATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTTGGCTACTTGACGACAAACAATTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.348

100

0.963
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362