Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OQE53_RS16620 Genome accession   NZ_CP111072
Coordinates   3363562..3364251 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain YFI-E109     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358562..3369251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQE53_RS16585 - 3358759..3359241 (-) 483 WP_032876168.1 flagellar protein FlgN -
  OQE53_RS16590 flgM 3359256..3359522 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  OQE53_RS16595 - 3359592..3360011 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  OQE53_RS16600 comFC 3360085..3360774 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  OQE53_RS16605 - 3360780..3361064 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  OQE53_RS16610 comFA 3361122..3362507 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  OQE53_RS16615 - 3362616..3363464 (-) 849 WP_032876160.1 DegV family protein -
  OQE53_RS16620 degU 3363562..3364251 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OQE53_RS16625 degS 3364328..3365491 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  OQE53_RS16630 - 3365714..3366361 (+) 648 WP_007614107.1 YigZ family protein -
  OQE53_RS16635 - 3366366..3367547 (+) 1182 WP_032876157.1 LCP family protein -
  OQE53_RS16640 - 3367646..3368722 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=757612 OQE53_RS16620 WP_003219701.1 3363562..3364251(-) (degU) [Bacillus velezensis strain YFI-E109]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=757612 OQE53_RS16620 WP_003219701.1 3363562..3364251(-) (degU) [Bacillus velezensis strain YFI-E109]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1