Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PHLH3_RS02095 Genome accession   NZ_AP021905
Coordinates   428106..428513 (+) Length   135 a.a.
NCBI ID   WP_021218373.1    Uniprot ID   A0AB36F8H0
Organism   Pseudomonas sp. Pc102     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 423106..433513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS02065 (PHLH8_04140) - 423256..424263 (-) 1008 WP_173175060.1 aspartate carbamoyltransferase catalytic subunit -
  PHLH3_RS02070 (PHLH8_04150) pyrR 424290..424802 (-) 513 WP_213627946.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PHLH3_RS02075 (PHLH8_04160) ruvX 424815..425255 (-) 441 WP_213630385.1 Holliday junction resolvase RuvX -
  PHLH3_RS02080 (PHLH8_04170) - 425252..425821 (-) 570 WP_173175056.1 YqgE/AlgH family protein -
  PHLH3_RS02085 (PHLH8_04180) - 425883..426776 (-) 894 WP_213627948.1 energy transducer TonB -
  PHLH3_RS02090 (PHLH8_04190) gshB 426864..427835 (-) 972 WP_213627950.1 glutathione synthase -
  PHLH3_RS02095 (PHLH8_04200) pilG 428106..428513 (+) 408 WP_021218373.1 twitching motility response regulator PilG Regulator
  PHLH3_RS02100 (PHLH8_04210) pilH 428562..428927 (+) 366 WP_003458790.1 twitching motility response regulator PilH -
  PHLH3_RS02105 (PHLH8_04220) - 428976..429512 (+) 537 WP_173175050.1 chemotaxis protein CheW -
  PHLH3_RS02110 (PHLH8_04230) - 429704..431752 (+) 2049 WP_111262586.1 methyl-accepting chemotaxis protein -
  PHLH3_RS02115 (PHLH8_04240) - 431815..432674 (+) 860 Protein_423 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14842.21 Da        Isoelectric Point: 6.7128

>NTDB_id=75740 PHLH3_RS02095 WP_021218373.1 428106..428513(+) (pilG) [Pseudomonas sp. Pc102]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=75740 PHLH3_RS02095 WP_021218373.1 428106..428513(+) (pilG) [Pseudomonas sp. Pc102]
ATGGAACAGCATTCCGAGGGTTTGAAGGTCATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCTGAAACTCTGCT
GAAGAAGGTGGGTTGTGAAGTCATCACGGCCGTCGACGGTTTCGACGCGCTGGCAAAGATCGCCGACACCCACCCCAATA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCCCTGATCAAAAACAACAGTGCTTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGATCAATA
CCTCACCAAGCCTTTCAGCAAGGAAGAGTTGCTCGGCGCGATCAAGACTCACGTGCCTGATTTCACCCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment