Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QJP96_RS10035 Genome accession   NZ_CP124483
Coordinates   2109102..2109758 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain AVS0575     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2104102..2114758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP96_RS10005 (QJP96_10005) dcyD 2104981..2105967 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QJP96_RS10010 (QJP96_10010) tcyL 2105982..2106650 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QJP96_RS10015 (QJP96_10015) tcyN 2106647..2107399 (+) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QJP96_RS10020 (QJP96_10020) sdiA 2107629..2108351 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  QJP96_RS10025 (QJP96_10025) yecF 2108419..2108643 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QJP96_RS10030 (QJP96_10030) yecU 2108630..2108806 (-) 177 WP_001307856.1 protein YecU -
  QJP96_RS10035 (QJP96_10035) letA 2109102..2109758 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QJP96_RS10040 (QJP96_10040) uvrC 2109755..2111587 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QJP96_RS10045 (QJP96_10045) pgsA 2111644..2112192 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJP96_RS10065 (QJP96_10065) yecA 2112841..2113506 (+) 666 WP_000847877.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=757263 QJP96_RS10035 WP_000611328.1 2109102..2109758(+) (letA) [Escherichia coli strain AVS0575]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=757263 QJP96_RS10035 WP_000611328.1 2109102..2109758(+) (letA) [Escherichia coli strain AVS0575]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482