Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KI243_RS08620 Genome accession   NZ_AP021904
Coordinates   1940838..1941473 (+) Length   211 a.a.
NCBI ID   WP_017126384.1    Uniprot ID   A0A7Y7Y1M4
Organism   Pseudomonas sp. Ost2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935838..1946473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI243_RS08600 (PHLH7_16840) - 1935893..1936825 (+) 933 WP_017126379.1 ABC transporter ATP-binding protein -
  KI243_RS08605 (PHLH7_16850) - 1936822..1937601 (+) 780 WP_017126380.1 ABC transporter permease -
  KI243_RS08610 (PHLH7_16860) - 1937687..1938208 (-) 522 WP_212810691.1 DUF2062 domain-containing protein -
  KI243_RS08615 (PHLH7_16870) comA 1938347..1940575 (+) 2229 WP_212810692.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI243_RS08620 (PHLH7_16880) exbB 1940838..1941473 (+) 636 WP_017126384.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KI243_RS08625 (PHLH7_16890) - 1941470..1941898 (+) 429 WP_017126385.1 biopolymer transporter ExbD -
  KI243_RS08630 (PHLH7_16900) lpxK 1941898..1942908 (+) 1011 WP_177119669.1 tetraacyldisaccharide 4'-kinase -
  KI243_RS08635 (PHLH7_16910) - 1942935..1943120 (+) 186 WP_010447200.1 Trm112 family protein -
  KI243_RS08640 (PHLH7_16920) kdsB 1943117..1943881 (+) 765 WP_177085152.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KI243_RS08645 (PHLH7_16930) - 1943881..1944345 (+) 465 WP_212810693.1 low molecular weight protein-tyrosine-phosphatase -
  KI243_RS08650 (PHLH7_16940) murB 1944342..1945361 (+) 1020 WP_212810694.1 UDP-N-acetylmuramate dehydrogenase -
  KI243_RS08655 (PHLH7_16950) - 1945593..1946063 (+) 471 WP_017126390.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23025.19 Da        Isoelectric Point: 6.8768

>NTDB_id=75709 KI243_RS08620 WP_017126384.1 1940838..1941473(+) (exbB) [Pseudomonas sp. Ost2]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPEHLLGQVWVWIKDKQLDKEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLIVGIPAVFFHRFLQRRIDELVVGMEQQAIKLVEVVQGDRDVEMPEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=75709 KI243_RS08620 WP_017126384.1 1940838..1941473(+) (exbB) [Pseudomonas sp. Ost2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTTTGGGCATCATTGC
CGAACGGCTGTGGACCTTGCGCGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGGACAAGGAAAAACTCAAGCAACTGCGGGCCGACTCCCCCCTGGGCGAGATTCTCGCGGCGGGCCTGGCGAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGGGTGATTCATGAGCTGGAGCGCTATAT
CAATGCCCTCGGCACCATTGCCGCCATGTCACCGTTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGTTCGGGCATGACCACCAACGCGGCGGTCCTCGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCT
TCCGGCCTGATCGTGGGGATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGACGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCGATCAAGCTGGTCGAGGTGGTACAGGGCGACCGTGATGTGGAAATGCCCGAGGGCAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7Y1M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment