Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   F7G23_RS17395 Genome accession   NZ_AP024921
Coordinates   3425112..3425849 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O145:H28 strain 12E115     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3420112..3430849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G23_RS17380 (EC12E115_3342) clpC 3420566..3423139 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  F7G23_RS17385 (EC12E115_3343) yfiH 3423269..3424000 (-) 732 WP_000040153.1 purine nucleoside phosphorylase YfiH -
  F7G23_RS17390 (EC12E115_3344) rluD 3423997..3424977 (-) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  F7G23_RS17395 (EC12E115_3345) comL 3425112..3425849 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  F7G23_RS17400 (EC12E115_3346) raiA 3426120..3426461 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  F7G23_RS17405 pheL 3426565..3426612 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  F7G23_RS17410 (EC12E115_3347) pheA 3426711..3427871 (+) 1161 WP_000200122.1 bifunctional chorismate mutase/prephenate dehydratase -
  F7G23_RS17415 (EC12E115_3348) tyrA 3427914..3429035 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  F7G23_RS17420 (EC12E115_3349) aroF 3429046..3430116 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  F7G23_RS17425 (EC12E115_3350) yfiL 3430326..3430691 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=75706 F7G23_RS17395 WP_000197686.1 3425112..3425849(+) (comL) [Escherichia coli O145:H28 strain 12E115]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=75706 F7G23_RS17395 WP_000197686.1 3425112..3425849(+) (comL) [Escherichia coli O145:H28 strain 12E115]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment