Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QJB08_RS06110 Genome accession   NZ_CP124467
Coordinates   1239125..1239862 (-) Length   245 a.a.
NCBI ID   WP_089633589.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0747     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1234125..1244862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJB08_RS06080 (QJB08_06080) yfiL 1234284..1234649 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  QJB08_RS06085 (QJB08_06085) aroF 1234859..1235929 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QJB08_RS06090 (QJB08_06090) tyrA 1235940..1237061 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QJB08_RS06095 (QJB08_06095) pheA 1237104..1238264 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  QJB08_RS06100 (QJB08_06100) pheL 1238363..1238410 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QJB08_RS06105 (QJB08_06105) raiA 1238514..1238855 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QJB08_RS06110 (QJB08_06110) comL 1239125..1239862 (-) 738 WP_089633589.1 outer membrane protein assembly factor BamD Machinery gene
  QJB08_RS06115 (QJB08_06115) rluD 1239997..1240977 (+) 981 WP_283187858.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QJB08_RS06120 (QJB08_06120) yfiH 1240974..1241705 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  QJB08_RS06125 (QJB08_06125) clpC 1241835..1244408 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.42 Da        Isoelectric Point: 6.4874

>NTDB_id=756906 QJB08_RS06110 WP_089633589.1 1239125..1239862(-) (comL) [Escherichia coli strain AVS0747]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGIDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=756906 QJB08_RS06110 WP_089633589.1 1239125..1239862(-) (comL) [Escherichia coli strain AVS0747]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCATCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376