Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KI231_RS21560 Genome accession   NZ_AP021903
Coordinates   4804492..4806726 (-) Length   744 a.a.
NCBI ID   WP_213026292.1    Uniprot ID   -
Organism   Pseudomonas sp. Seg1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4799492..4811726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS21525 (PHLH6_42580) murB 4799872..4800891 (-) 1020 WP_213026288.1 UDP-N-acetylmuramate dehydrogenase -
  KI231_RS21530 (PHLH6_42590) - 4800888..4801352 (-) 465 WP_213026289.1 low molecular weight protein-tyrosine-phosphatase -
  KI231_RS21535 (PHLH6_42600) kdsB 4801352..4802116 (-) 765 WP_213026290.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KI231_RS21540 (PHLH6_42610) - 4802113..4802298 (-) 186 WP_003174668.1 Trm112 family protein -
  KI231_RS21545 (PHLH6_42620) lpxK 4802321..4803331 (-) 1011 WP_213026291.1 tetraacyldisaccharide 4'-kinase -
  KI231_RS21550 (PHLH6_42630) - 4803331..4803759 (-) 429 WP_103307264.1 biopolymer transporter ExbD -
  KI231_RS21555 (PHLH6_42640) exbB 4803756..4804391 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KI231_RS21560 (PHLH6_42650) comA 4804492..4806726 (-) 2235 WP_213026292.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI231_RS21565 (PHLH6_42660) - 4806863..4807381 (+) 519 WP_103307266.1 DUF2062 domain-containing protein -
  KI231_RS21570 (PHLH6_42670) - 4807551..4808330 (-) 780 WP_103307267.1 ABC transporter permease -
  KI231_RS21575 (PHLH6_42680) - 4808327..4809259 (-) 933 WP_213026293.1 ABC transporter ATP-binding protein -
  KI231_RS21580 (PHLH6_42690) - 4809393..4810016 (-) 624 WP_213026294.1 glutathione S-transferase -
  KI231_RS21585 (PHLH6_42700) - 4810061..4810720 (-) 660 WP_213026295.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81919.18 Da        Isoelectric Point: 9.7714

>NTDB_id=75685 KI231_RS21560 WP_213026292.1 4804492..4806726(-) (comA) [Pseudomonas sp. Seg1]
MRTGMMALAVGLLAPVFMSALPPVWLMVLLPVVGLMLLPFRSYPLAFLLFGFTWACISAQWALNDRLSVELDGETRWVEG
RVIGLPQHSDGVVRFELADARSRHEKLPTLMRLAWYAGPPVNSGERWRLAVKLKRPVGLLNPDAFDYEAWLLAQRIGATG
TIKDGERLTAARGAWRDGIRQRLLTADAQGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAALMYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGAWWPLLLAFDGVLLLDPL
ASLRPGFWLSFAAVAVLTFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALHLPISLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPYVGEWLLWLAGGLIDWLFQGLAVIAGQWPAWIAPSIPVWALLIGSLGAVLLLLPRGVPMRPLGWPLLLVLV
APPREKPGEGLADIWQLDVGQGLAIVVRTRHHVLLYDAGPRFGDFDLGERVVLPALRKLNVEKLDLMLLSHADADHAGGA
LAVARGLKVNRVISGDPPGLSAELNAETCESGQQWQWDGVSFQLWQWTDAHDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLQSPLAVETQWLQAPHHGSRSSSSMALLKTLKPQAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GTFKAPWAMRQQPRFWRDPPALAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=75685 KI231_RS21560 WP_213026292.1 4804492..4806726(-) (comA) [Pseudomonas sp. Seg1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTTCTGGCTCCGGTTTTTATGTCGGCGTTACCGCCGGTCTGGTTGAT
GGTGTTGCTGCCGGTTGTGGGTTTGATGTTGCTGCCGTTTCGCAGCTACCCGCTGGCGTTTTTGCTGTTCGGCTTTACTT
GGGCCTGTATCAGCGCGCAATGGGCCTTGAATGACCGGTTGTCCGTTGAGCTGGATGGAGAAACCCGCTGGGTCGAAGGG
CGGGTGATCGGTCTGCCGCAGCACAGCGATGGCGTGGTGCGATTCGAATTGGCAGATGCACGCTCGCGTCACGAAAAACT
GCCGACATTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGTCTGGCCGTCAAACTCA
AACGCCCGGTGGGTTTGCTCAATCCTGATGCGTTCGACTACGAAGCCTGGCTGCTCGCGCAACGCATCGGCGCAACCGGC
ACGATCAAGGATGGCGAACGTCTGACAGCCGCGCGCGGGGCCTGGCGCGATGGCATTCGCCAGCGCTTGTTGACGGCGGA
CGCGCAAGGCCGGGCCGGGGCGCTGGCCGCGTTGGTGCTGGGTGATGGCTCAGGACTCAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTCATTTCCGGTCAGCACATCGGGATGCTCGCGGCGCTGATGTACTTGCTG
GTCGCAGGTCTTGCCCGTTATGGGCTGTGGCCGCTGCGCTGGCCGTGGCTGCCATGGGCTTGTGGTCTGGCATTCGCGGC
GGCGCTCGGTTACGGGCTGCTCGCCGGGTTCGATGTGCCGGTGCGACGCGCCTGCGTGATGGTCGGCCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGTGCGTGGTGGCCGCTGTTATTGGCGTTCGACGGCGTGCTGTTGCTGGATCCGCTG
GCCAGTCTACGTCCTGGTTTCTGGTTGTCCTTCGCCGCGGTGGCGGTGCTGACTTTCACCTTTGGCGGGCGCCTCGGGGC
ATGGCGCTGGTGGCAGACATGGACGCGAGCGCAGTGGCTGATTGCGATCGGTCTCTGTCCTGTGTTGTTGGCGCTTCACC
TGCCAATCAGCCTGAGCGGGCCGTTGGCGAATTTGTTGGCGGTGCCCTGGATCAGTCTGCTGGTGCTGCCGCCGGCATTG
CTCGGGACTTTGCTGTTACCGGTGCCGTATGTCGGCGAATGGCTGCTGTGGCTGGCGGGTGGTTTGATCGATTGGTTGTT
TCAGGGCTTAGCCGTGATCGCCGGGCAATGGCCCGCGTGGATTGCACCGTCAATTCCCGTGTGGGCGTTGCTGATTGGCA
GCCTCGGCGCCGTGCTGTTGCTATTGCCGCGTGGTGTGCCGATGCGTCCGTTGGGCTGGCCCCTGCTGCTGGTACTGGTA
GCGCCGCCACGCGAGAAACCGGGCGAAGGATTGGCCGACATCTGGCAACTCGATGTCGGCCAGGGCCTGGCGATTGTGGT
CCGTACCCGTCACCACGTCTTGCTCTATGACGCCGGGCCGCGTTTCGGGGATTTCGATCTCGGTGAGCGCGTGGTGCTGC
CAGCCTTGCGCAAGCTGAATGTCGAGAAACTTGACCTTATGCTGCTCAGTCACGCGGATGCCGATCACGCCGGCGGCGCA
TTGGCCGTGGCGCGTGGTTTGAAAGTGAATAGAGTCATCAGCGGCGATCCACCGGGACTGTCTGCTGAACTGAACGCCGA
AACGTGTGAAAGTGGCCAGCAATGGCAGTGGGACGGTGTCAGTTTTCAACTCTGGCAATGGACAGATGCCCATGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGATCGAAGCCAATGGCGAGCGCCTCTTGCTGACGGGCGATATCGACACTCACGCCGAA
CGTGTTTTGCTGCAAAGCCCTCTGGCTGTTGAAACGCAATGGCTGCAAGCACCGCACCATGGCAGCCGCAGTTCCTCATC
CATGGCCCTGCTCAAGACATTGAAACCTCAGGCCGTGCTGATTTCTCGCGGTCACGGCAACTCGTTCGGCCATCCGCACC
CGACGGTTCTGGCGCGGTATCGCAAACAAGGCCTGCGCATTTACGACAGTGCCGAGCAGGGTGCCATTCATCTGCAATTG
GGTACCTTCAAAGCGCCATGGGCGATGCGCCAGCAGCCGCGTTTCTGGCGCGATCCGCCCGCACTGGCCCGTTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.268

96.237

0.609

Multiple sequence alignment