Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KI231_RS21555 Genome accession   NZ_AP021903
Coordinates   4803756..4804391 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. Seg1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4798756..4809391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS21520 (PHLH6_42570) - 4799058..4799528 (-) 471 WP_213026287.1 (2Fe-2S)-binding protein -
  KI231_RS21525 (PHLH6_42580) murB 4799872..4800891 (-) 1020 WP_213026288.1 UDP-N-acetylmuramate dehydrogenase -
  KI231_RS21530 (PHLH6_42590) - 4800888..4801352 (-) 465 WP_213026289.1 low molecular weight protein-tyrosine-phosphatase -
  KI231_RS21535 (PHLH6_42600) kdsB 4801352..4802116 (-) 765 WP_213026290.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KI231_RS21540 (PHLH6_42610) - 4802113..4802298 (-) 186 WP_003174668.1 Trm112 family protein -
  KI231_RS21545 (PHLH6_42620) lpxK 4802321..4803331 (-) 1011 WP_213026291.1 tetraacyldisaccharide 4'-kinase -
  KI231_RS21550 (PHLH6_42630) - 4803331..4803759 (-) 429 WP_103307264.1 biopolymer transporter ExbD -
  KI231_RS21555 (PHLH6_42640) exbB 4803756..4804391 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KI231_RS21560 (PHLH6_42650) comA 4804492..4806726 (-) 2235 WP_213026292.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI231_RS21565 (PHLH6_42660) - 4806863..4807381 (+) 519 WP_103307266.1 DUF2062 domain-containing protein -
  KI231_RS21570 (PHLH6_42670) - 4807551..4808330 (-) 780 WP_103307267.1 ABC transporter permease -
  KI231_RS21575 (PHLH6_42680) - 4808327..4809259 (-) 933 WP_213026293.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=75684 KI231_RS21555 WP_007908216.1 4803756..4804391(-) (exbB) [Pseudomonas sp. Seg1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=75684 KI231_RS21555 WP_007908216.1 4803756..4804391(-) (exbB) [Pseudomonas sp. Seg1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAGTTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCTCGGGTCATTCACGAGCTCGAGCGCTACGT
CAATGCTCTGGGCACCATCGCCGCGATGTCACCGTTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTCCTGGCCGGTGGTATCTCCAAGGCGTTGATCACCACAGCC
GCAGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCTGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment