Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OEI98_RS14790 Genome accession   NZ_CP110888
Coordinates   2807102..2807554 (-) Length   150 a.a.
NCBI ID   WP_019907098.1    Uniprot ID   -
Organism   Thermoanaerobacter sp. RKWS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2802102..2812554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEI98_RS14755 (OEI98_002951) rplI 2803091..2803534 (-) 444 WP_003871294.1 50S ribosomal protein L9 -
  OEI98_RS14760 (OEI98_002952) - 2803531..2805496 (-) 1966 Protein_2815 DHH family phosphoesterase -
  OEI98_RS14775 (OEI98_002955) - 2805515..2806423 (-) 909 WP_266038756.1 YybS family protein -
  OEI98_RS14780 (OEI98_002956) - 2806432..2806739 (-) 308 Protein_2817 MazG-like family protein -
  OEI98_RS14785 (OEI98_002957) rpsR 2806820..2807086 (-) 267 WP_003867432.1 30S ribosomal protein S18 -
  OEI98_RS14790 (OEI98_002958) ssbA 2807102..2807554 (-) 453 WP_019907098.1 single-stranded DNA-binding protein Machinery gene
  OEI98_RS14795 (OEI98_002959) rpsF 2807586..2807873 (-) 288 WP_003871386.1 30S ribosomal protein S6 -
  OEI98_RS14800 (OEI98_002960) - 2807941..2808146 (-) 206 Protein_2821 DUF951 domain-containing protein -
  OEI98_RS14805 (OEI98_002961) mscS 2808225..2809079 (-) 855 WP_028986059.1 small-conductance mechanosensitive channel MscS -
  OEI98_RS14810 (OEI98_002962) yyaC 2809229..2809786 (+) 558 WP_004399536.1 spore protease YyaC -
  OEI98_RS14815 (OEI98_002963) cphA 2809789..2812419 (-) 2631 WP_074592732.1 cyanophycin synthetase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16949.95 Da        Isoelectric Point: 4.3472

>NTDB_id=756846 OEI98_RS14790 WP_019907098.1 2807102..2807554(-) (ssbA) [Thermoanaerobacter sp. RKWS2]
MLNKVILIGRLTKDPVMRYSANMVPVTTFTLAVNRNYVSQSGERPTDFIPIVTWRKLAEICANNLKKGRLIAVTGSIQTR
TWDDNSGNRHWVTEVVADDVRFLEPKSGFGSSGNAEENRDFDEGFDSVFEDIPEEFEGFTPIESEDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=756846 OEI98_RS14790 WP_019907098.1 2807102..2807554(-) (ssbA) [Thermoanaerobacter sp. RKWS2]
ATGTTAAATAAGGTTATTTTAATAGGCCGTCTTACAAAAGACCCTGTGATGAGGTATAGTGCTAACATGGTTCCTGTTAC
TACATTTACATTAGCGGTTAACAGGAATTATGTCAGTCAAAGCGGGGAAAGGCCTACAGATTTTATACCCATCGTAACTT
GGAGAAAACTTGCAGAAATTTGCGCTAACAATTTAAAAAAAGGCAGATTAATAGCGGTAACTGGAAGCATTCAAACCCGA
ACATGGGATGATAATAGCGGCAATCGACATTGGGTTACTGAAGTTGTAGCAGATGACGTGAGATTTTTAGAGCCGAAATC
TGGTTTTGGCAGCAGTGGCAATGCTGAAGAAAATAGAGATTTTGATGAAGGCTTTGACAGTGTATTTGAAGATATACCGG
AAGAGTTTGAGGGCTTTACACCTATAGAGAGTGAAGATGATTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.286

100

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

44

83.333

0.367