Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   OQ460_RS23990 Genome accession   NZ_CP110853
Coordinates   5241919..5242326 (-) Length   135 a.a.
NCBI ID   WP_410019600.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5236919..5247326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS23975 (OQ460_23905) - 5238908..5240959 (-) 2052 WP_410019597.1 methyl-accepting chemotaxis protein -
  OQ460_RS23980 (OQ460_23910) - 5240956..5241495 (-) 540 WP_410019598.1 chemotaxis protein CheW -
  OQ460_RS23985 (OQ460_23915) pilH 5241508..5241873 (-) 366 WP_410019599.1 twitching motility response regulator PilH -
  OQ460_RS23990 (OQ460_23920) pilG 5241919..5242326 (-) 408 WP_410019600.1 twitching motility response regulator PilG Regulator
  OQ460_RS23995 (OQ460_23925) gshB 5242565..5243518 (+) 954 WP_410019601.1 glutathione synthase -
  OQ460_RS24000 (OQ460_23930) - 5243596..5244495 (+) 900 WP_410019602.1 TonB family protein -
  OQ460_RS24005 (OQ460_23935) - 5244557..5245126 (+) 570 WP_410019603.1 YqgE/AlgH family protein -
  OQ460_RS24010 (OQ460_23940) ruvX 5245126..5245563 (+) 438 WP_410019604.1 Holliday junction resolvase RuvX -
  OQ460_RS24015 (OQ460_23945) pyrR 5245645..5246151 (+) 507 WP_410019605.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  OQ460_RS24020 (OQ460_23950) - 5246176..5247180 (+) 1005 WP_410019606.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14954.44 Da        Isoelectric Point: 7.3841

>NTDB_id=756664 OQ460_RS23990 WP_410019600.1 5241919..5242326(-) (pilG) [Pseudomonas sp. 16FHM2]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIVDHHPHIIFIDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLSTIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=756664 OQ460_RS23990 WP_410019600.1 5241919..5242326(-) (pilG) [Pseudomonas sp. 16FHM2]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACCGCCGAGACACTGCT
GAAGAACGTAGGGTGCGAAGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCAAGATCGTTGATCATCACCCGCACA
TTATCTTTATCGACATCATGATGCCGCGACTGGATGGCTATCAAACCTGCGCGCTGGTCAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAGGGATGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGTTCTGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGTACGATCAAGGCCTATGTGCCGGGTTTCGCGGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

92.593

0.659
  vicR Streptococcus mutans UA159

38.889

93.333

0.363