Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   OHI04_RS11510 Genome accession   NZ_CP110849
Coordinates   2286868..2287359 (-) Length   163 a.a.
NCBI ID   WP_012898637.1    Uniprot ID   A0A4P6JE80
Organism   Lactococcus lactis strain VHProbi V60     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2281868..2292359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS11510 (OHI04_11515) comX 2286868..2287359 (-) 492 WP_012898637.1 hypothetical protein Regulator
  OHI04_RS11515 (OHI04_11520) ezrA 2287616..2289346 (-) 1731 WP_039116479.1 septation ring formation regulator EzrA -
  OHI04_RS11520 (OHI04_11525) tsf 2289551..2290579 (-) 1029 WP_010906339.1 translation elongation factor Ts -
  OHI04_RS11525 (OHI04_11530) rpsB 2290702..2291469 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19791.63 Da        Isoelectric Point: 5.6118

>NTDB_id=756640 OHI04_RS11510 WP_012898637.1 2286868..2287359(-) (comX) [Lactococcus lactis strain VHProbi V60]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=756640 OHI04_RS11510 WP_012898637.1 2286868..2287359(-) (comX) [Lactococcus lactis strain VHProbi V60]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGAATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6JE80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

99.387

100

0.994
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761